miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 118304 1.09 0.002654
Target:  5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3'
miRNA:   3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 149205 1.09 0.002654
Target:  5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3'
miRNA:   3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16211 0.8 0.214177
Target:  5'- gACGGUGGGGGugguGUCCGUGGcGAGcGCGg -3'
miRNA:   3'- -UGUCAUCCCCu---CAGGCACU-CUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 80618 0.76 0.390231
Target:  5'- uCGGUGGGGG-GUCCGcggugGAGAgGGGCGg -3'
miRNA:   3'- uGUCAUCCCCuCAGGCa----CUCU-CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5956 0.74 0.469783
Target:  5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3'
miRNA:   3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 36857 0.74 0.469783
Target:  5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3'
miRNA:   3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 37553 0.74 0.479132
Target:  5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3'
miRNA:   3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 6652 0.74 0.479132
Target:  5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3'
miRNA:   3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16714 0.73 0.498098
Target:  5'- gGguGUGGGGGGGUUCcguaggggaugGUGAGGGGGCc -3'
miRNA:   3'- -UguCAUCCCCUCAGG-----------CACUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 43041 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 43007 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 47840 0.72 0.566812
Target:  5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3'
miRNA:   3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 116919 0.72 0.607192
Target:  5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3'
miRNA:   3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 147820 0.72 0.607192
Target:  5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3'
miRNA:   3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 10505 0.71 0.617351
Target:  5'- -gGGUAGGGGAGagaagCCGgagGcGGGGGCGg -3'
miRNA:   3'- ugUCAUCCCCUCa----GGCa--CuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 69954 0.7 0.668154
Target:  5'- gGCcGaGGGGGGGUCUGUGGccGGGGGCu -3'
miRNA:   3'- -UGuCaUCCCCUCAGGCACU--CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 149500 0.7 0.688331
Target:  5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3'
miRNA:   3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5'
21376 5' -56.5 NC_004812.1 + 36006 0.7 0.688331
Target:  5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3'
miRNA:   3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5105 0.7 0.688331
Target:  5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3'
miRNA:   3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 118599 0.7 0.688331
Target:  5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3'
miRNA:   3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.