miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 155024 0.68 0.794086
Target:  5'- -gAGgcGGGGAG-CCGUGcGGGGGgGa -3'
miRNA:   3'- ugUCauCCCCUCaGGCACuCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 115525 0.69 0.757029
Target:  5'- aACGGgcGGGGAGUaCGgaGGGGGGGCc -3'
miRNA:   3'- -UGUCauCCCCUCAgGCa-CUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 7942 0.69 0.757029
Target:  5'- cGCGGccgGGGGGcgcGUCCG-GGGGGGGCc -3'
miRNA:   3'- -UGUCa--UCCCCu--CAGGCaCUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 5337 0.69 0.775811
Target:  5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3'
miRNA:   3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 46654 0.69 0.775811
Target:  5'- ----gGGGuGGGGUCCGUGgccGGGGGGCa -3'
miRNA:   3'- ugucaUCC-CCUCAGGCAC---UCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 154738 0.69 0.775811
Target:  5'- gGCGGgcGGGG-GUCgCG-GAG-GAGCGg -3'
miRNA:   3'- -UGUCauCCCCuCAG-GCaCUCuCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 71864 0.68 0.784102
Target:  5'- -gGGaUGGGGGucggccaGGUUgGUGAGAGAGCc -3'
miRNA:   3'- ugUC-AUCCCC-------UCAGgCACUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 66085 0.68 0.785017
Target:  5'- cGCcGUAGGuGGGGUCCGgguAGaAGAGCa -3'
miRNA:   3'- -UGuCAUCC-CCUCAGGCac-UC-UCUCGc -5'
21376 5' -56.5 NC_004812.1 + 104172 0.68 0.785017
Target:  5'- cGCGGgcGGGGGGaugggcggcgaUgCGggGAGGGAGCGa -3'
miRNA:   3'- -UGUCauCCCCUC-----------AgGCa-CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 4778 0.69 0.72806
Target:  5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3'
miRNA:   3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 45102 0.7 0.708323
Target:  5'- gGCGGgcGGGGGG--CGUGAGucGGGGCGa -3'
miRNA:   3'- -UGUCauCCCCUCagGCACUC--UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5105 0.7 0.688331
Target:  5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3'
miRNA:   3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 80618 0.76 0.390231
Target:  5'- uCGGUGGGGG-GUCCGcggugGAGAgGGGCGg -3'
miRNA:   3'- uGUCAUCCCCuCAGGCa----CUCU-CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5956 0.74 0.469783
Target:  5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3'
miRNA:   3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 6652 0.74 0.479132
Target:  5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3'
miRNA:   3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 43007 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 43041 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 47840 0.72 0.566812
Target:  5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3'
miRNA:   3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 116919 0.72 0.607192
Target:  5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3'
miRNA:   3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 118599 0.7 0.688331
Target:  5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3'
miRNA:   3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.