miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 156443 0.68 0.811783
Target:  5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3'
miRNA:   3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 156196 0.67 0.828837
Target:  5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3'
miRNA:   3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 155062 0.67 0.828837
Target:  5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3'
miRNA:   3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 155024 0.68 0.794086
Target:  5'- -gAGgcGGGGAG-CCGUGcGGGGGgGa -3'
miRNA:   3'- ugUCauCCCCUCaGGCACuCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 154893 0.68 0.811783
Target:  5'- cGCGGggccGGGcGGAGUCUGgcgGAGucGGGCGg -3'
miRNA:   3'- -UGUCa---UCC-CCUCAGGCa--CUCu-CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 154738 0.69 0.775811
Target:  5'- gGCGGgcGGGG-GUCgCG-GAG-GAGCGg -3'
miRNA:   3'- -UGUCauCCCCuCAG-GCaCUCuCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 153448 0.66 0.908617
Target:  5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3'
miRNA:   3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 152649 0.66 0.889441
Target:  5'- cGCGGcGGGGGGGcgCCGggccuccGGGAG-GCGg -3'
miRNA:   3'- -UGUCaUCCCCUCa-GGCa------CUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 149500 0.7 0.688331
Target:  5'- gGCGGUGGGGG--UCCGaggGGGAGAGaCa -3'
miRNA:   3'- -UGUCAUCCCCucAGGCa--CUCUCUC-Gc -5'
21376 5' -56.5 NC_004812.1 + 149205 1.09 0.002654
Target:  5'- cACAGUAGGGGAGUCCGUGAGAGAGCGg -3'
miRNA:   3'- -UGUCAUCCCCUCAGGCACUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148768 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148716 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148639 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148587 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148535 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148483 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 147820 0.72 0.607192
Target:  5'- gGCGGgaGGGGGAGgaggCCGgagugGGGGGGGUGg -3'
miRNA:   3'- -UGUCa-UCCCCUCa---GGCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 145386 0.7 0.708323
Target:  5'- aACGGcGGGGGAgaugcGUCCGUcgGAG-GAGCGc -3'
miRNA:   3'- -UGUCaUCCCCU-----CAGGCA--CUCuCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 137987 0.66 0.896062
Target:  5'- uCGGgggGGGGGGGgggggGGGGGAGCGg -3'
miRNA:   3'- uGUCa--UCCCCUCaggcaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 125542 0.68 0.811783
Target:  5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3'
miRNA:   3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.