miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 29385 0.68 0.811783
Target:  5'- cGCGGggccGGGcGGAGUCUGgcgGAGucGGGCGg -3'
miRNA:   3'- -UGUCa---UCC-CCUCAGGCa--CUCu-CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 40709 0.69 0.775811
Target:  5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16126 0.7 0.698355
Target:  5'- -uGGUGGcGGGGGcccCCGUGGuGGGGGCGg -3'
miRNA:   3'- ugUCAUC-CCCUCa--GGCACU-CUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 37553 0.74 0.479132
Target:  5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3'
miRNA:   3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23130 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 100862 0.67 0.828837
Target:  5'- gACGGggccgcGGGGGAGg-CGgGGGAGGGCGc -3'
miRNA:   3'- -UGUCa-----UCCCCUCagGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 36238 0.69 0.775811
Target:  5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3'
miRNA:   3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 36857 0.74 0.469783
Target:  5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3'
miRNA:   3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 29554 0.67 0.828837
Target:  5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3'
miRNA:   3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16211 0.8 0.214177
Target:  5'- gACGGUGGGGGugguGUCCGUGGcGAGcGCGg -3'
miRNA:   3'- -UGUCAUCCCCu---CAGGCACU-CUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 40571 0.69 0.775811
Target:  5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 156443 0.68 0.811783
Target:  5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3'
miRNA:   3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 45449 0.69 0.757029
Target:  5'- gGCAG-AGGGugguGAGgugCCG-GAGGGAGCGc -3'
miRNA:   3'- -UGUCaUCCC----CUCa--GGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 145386 0.7 0.708323
Target:  5'- aACGGcGGGGGAgaugcGUCCGUcgGAG-GAGCGc -3'
miRNA:   3'- -UGUCaUCCCCU-----CAGGCA--CUCuCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 69954 0.7 0.668154
Target:  5'- gGCcGaGGGGGGGUCUGUGGccGGGGGCu -3'
miRNA:   3'- -UGuCaUCCCCUCAGGCACU--CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 16714 0.73 0.498098
Target:  5'- gGguGUGGGGGGGUUCcguaggggaugGUGAGGGGGCc -3'
miRNA:   3'- -UguCAUCCCCUCAGG-----------CACUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 39085 0.66 0.889441
Target:  5'- -gGGUccGGGccGGGGUCCGgccGAGAGCGg -3'
miRNA:   3'- ugUCA--UCC--CCUCAGGCacuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23182 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 22974 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 50198 0.67 0.868254
Target:  5'- cGCAG-AGGaacgccGGGG-CCGUGAGGccGAGCGg -3'
miRNA:   3'- -UGUCaUCC------CCUCaGGCACUCU--CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.