miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 148768 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 22974 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23026 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148587 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23078 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23286 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23234 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23182 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23130 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 106751 0.66 0.882597
Target:  5'- cCGGgcgcGGGGGGGUCgGagGAG-GGGCGg -3'
miRNA:   3'- uGUCa---UCCCCUCAGgCa-CUCuCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 11058 0.66 0.882597
Target:  5'- ---uUGGGGGccgGGUCCGUGccGGGGAGgCGa -3'
miRNA:   3'- ugucAUCCCC---UCAGGCAC--UCUCUC-GC- -5'
21376 5' -56.5 NC_004812.1 + 35553 0.66 0.882597
Target:  5'- cGCGGgcGGGGc--CCGgauagaggGAGGGGGCGg -3'
miRNA:   3'- -UGUCauCCCCucaGGCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 50198 0.67 0.868254
Target:  5'- cGCAG-AGGaacgccGGGG-CCGUGAGGccGAGCGg -3'
miRNA:   3'- -UGUCaUCC------CCUCaGGCACUCU--CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 77937 0.67 0.860766
Target:  5'- aGCGGUucGGGGuGGGUCgggGUGGcGGGGGCGa -3'
miRNA:   3'- -UGUCA--UCCC-CUCAGg--CACU-CUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 80690 0.67 0.860766
Target:  5'- cCAGgucccUGGGGGGGUCCGgcccgGGGaAGGGaCGa -3'
miRNA:   3'- uGUC-----AUCCCCUCAGGCa----CUC-UCUC-GC- -5'
21376 5' -56.5 NC_004812.1 + 27793 0.67 0.845183
Target:  5'- cCGGgggagAGGGcGGGgCCGggGGGGGAGCGg -3'
miRNA:   3'- uGUCa----UCCC-CUCaGGCa-CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 29554 0.67 0.828837
Target:  5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3'
miRNA:   3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 156196 0.67 0.828837
Target:  5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3'
miRNA:   3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 155062 0.67 0.828837
Target:  5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3'
miRNA:   3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 100862 0.67 0.828837
Target:  5'- gACGGggccgcGGGGGAGg-CGgGGGAGGGCGc -3'
miRNA:   3'- -UGUCa-----UCCCCUCagGCaCUCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.