miRNA display CGI


Results 41 - 60 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 81580 0.66 0.880334
Target:  5'- -uGGAgcagaccgAGAAGGCGGCCGaGCUgGaccaGGCg -3'
miRNA:   3'- gcCCUa-------UUUUCCGUCGGC-CGAgC----CCG- -5'
21377 3' -56.9 NC_004812.1 + 16083 0.66 0.880334
Target:  5'- aCGGGAgGAAacGGGC--CUGGaguCUCGGGCa -3'
miRNA:   3'- -GCCCUaUUU--UCCGucGGCC---GAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 25345 0.66 0.880334
Target:  5'- gGGGAgagGAGAGG-GGCCGGa--GGcGCg -3'
miRNA:   3'- gCCCUa--UUUUCCgUCGGCCgagCC-CG- -5'
21377 3' -56.9 NC_004812.1 + 133238 0.66 0.880334
Target:  5'- uGGcGAcGGAcacGGCGGCCGGggCGGuGCa -3'
miRNA:   3'- gCC-CUaUUUu--CCGUCGGCCgaGCC-CG- -5'
21377 3' -56.9 NC_004812.1 + 104151 0.66 0.880334
Target:  5'- cCGGu-----AGGCGGCaggaGGCgacgCGGGCg -3'
miRNA:   3'- -GCCcuauuuUCCGUCGg---CCGa---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 150853 0.66 0.880334
Target:  5'- gGGGAgagGAGAGG-GGCCGGa--GGcGCg -3'
miRNA:   3'- gCCCUa--UUUUCCgUCGGCCgagCC-CG- -5'
21377 3' -56.9 NC_004812.1 + 7526 0.66 0.880334
Target:  5'- aGGGAgGGGGGGCGGCgauGCgCGGGg -3'
miRNA:   3'- gCCCUaUUUUCCGUCGgc-CGaGCCCg -5'
21377 3' -56.9 NC_004812.1 + 142295 0.66 0.880334
Target:  5'- -uGGAc-GAGGGCcccgGGCCGGCgcggCGGGg -3'
miRNA:   3'- gcCCUauUUUCCG----UCGGCCGa---GCCCg -5'
21377 3' -56.9 NC_004812.1 + 126741 0.66 0.880334
Target:  5'- cCGGGGUccu-GGCGGaCGGCUUGucugcGGCu -3'
miRNA:   3'- -GCCCUAuuuuCCGUCgGCCGAGC-----CCG- -5'
21377 3' -56.9 NC_004812.1 + 98651 0.66 0.880334
Target:  5'- cCGGGcgcGAcgcgcgcacgcgGGGGUcgAGCCGGggCGGGCg -3'
miRNA:   3'- -GCCCua-UU------------UUCCG--UCGGCCgaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 38427 0.66 0.880334
Target:  5'- aGGGAgGGGGGGCGGCgauGCgCGGGg -3'
miRNA:   3'- gCCCUaUUUUCCGUCGgc-CGaGCCCg -5'
21377 3' -56.9 NC_004812.1 + 128497 0.66 0.879632
Target:  5'- uCGGGcgGGccGGUccaguuGCCGGCccaggcggccgugUCGGGCc -3'
miRNA:   3'- -GCCCuaUUuuCCGu-----CGGCCG-------------AGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 91486 0.66 0.878222
Target:  5'- uGGGcgAgcuuGAGGGCgggcuuggcggccgAGCCGGCggcCGGGg -3'
miRNA:   3'- gCCCuaU----UUUCCG--------------UCGGCCGa--GCCCg -5'
21377 3' -56.9 NC_004812.1 + 90245 0.66 0.873941
Target:  5'- gGGGAUGGGGuacuaccucggcaucGGCGGCUGcugccccgccugcaGCgCGGGCg -3'
miRNA:   3'- gCCCUAUUUU---------------CCGUCGGC--------------CGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 88204 0.66 0.87322
Target:  5'- gCGGGGcGAGccGCGGCCccggacggcGGCU-GGGCg -3'
miRNA:   3'- -GCCCUaUUUucCGUCGG---------CCGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 6830 0.66 0.87322
Target:  5'- -uGGGUGGGGGGCGG-CGGCccUCGcGGUc -3'
miRNA:   3'- gcCCUAUUUUCCGUCgGCCG--AGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 82659 0.66 0.87322
Target:  5'- aGGGcgAc--GGCuuCCGGCucuUCGGGCg -3'
miRNA:   3'- gCCCuaUuuuCCGucGGCCG---AGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 25347 0.66 0.87322
Target:  5'- cCGGcGGUGGGcggcgaccacGGGCucGCCGGCguccgCGGGa -3'
miRNA:   3'- -GCC-CUAUUU----------UCCGu-CGGCCGa----GCCCg -5'
21377 3' -56.9 NC_004812.1 + 4416 0.66 0.87322
Target:  5'- uGGcGUAGcccAGGuGCGGCaCGGCgCGGGCc -3'
miRNA:   3'- gCCcUAUU---UUC-CGUCG-GCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 135793 0.66 0.87322
Target:  5'- aCGcGGAUGGugacGAGGCGGgCGcCgacgCGGGCg -3'
miRNA:   3'- -GC-CCUAUU----UUCCGUCgGCcGa---GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.