miRNA display CGI


Results 21 - 40 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 18340 0.66 0.893906
Target:  5'- aCGGGAUGucugucgacAucGGCcaCCGGCggcgcCGGGCc -3'
miRNA:   3'- -GCCCUAU---------UuuCCGucGGCCGa----GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 44536 0.66 0.893248
Target:  5'- aGGGGU---GGGCguGGCCcgGGCUcgacggaCGGGCc -3'
miRNA:   3'- gCCCUAuuuUCCG--UCGG--CCGA-------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 36361 0.66 0.893248
Target:  5'- cCGGGGcaccuGGGcGCAGCCgaagacgGGCagGGGCu -3'
miRNA:   3'- -GCCCUauu--UUC-CGUCGG-------CCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 9744 0.66 0.891927
Target:  5'- cCGGGAgggGAccgccaccaggcccGcGGCGcGCCGGCggccgcgCGGGUg -3'
miRNA:   3'- -GCCCUa--UU--------------UuCCGU-CGGCCGa------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 65736 0.66 0.889927
Target:  5'- cCGaGGAgGAGAcGGCGauccgccuccgcggcGCCGGCUuccgcgccgCGGGCg -3'
miRNA:   3'- -GC-CCUaUUUU-CCGU---------------CGGCCGA---------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 97927 0.66 0.88723
Target:  5'- uGGcgcuGAGGGCGGCCaGGUUCGccuGGCc -3'
miRNA:   3'- gCCcuauUUUCCGUCGG-CCGAGC---CCG- -5'
21377 3' -56.9 NC_004812.1 + 31542 0.66 0.88723
Target:  5'- cCGGGAUc-GAGuGCGcccaccaacGCCGcGCcCGGGCg -3'
miRNA:   3'- -GCCCUAuuUUC-CGU---------CGGC-CGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 30131 0.66 0.88723
Target:  5'- uCGGGGgc--GGGCAcGCCGgGCUCcccuaGGCc -3'
miRNA:   3'- -GCCCUauuuUCCGU-CGGC-CGAGc----CCG- -5'
21377 3' -56.9 NC_004812.1 + 3471 0.66 0.88723
Target:  5'- gCGGGcgGucgcgccgucAGcGCGGCgGGCcgCGGGCg -3'
miRNA:   3'- -GCCCuaUuu--------UC-CGUCGgCCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 139099 0.66 0.88723
Target:  5'- gGGGAgccgAAAGacgcGGCuggGGCCGGCgcggaagaGGGCc -3'
miRNA:   3'- gCCCUa---UUUU----CCG---UCGGCCGag------CCCG- -5'
21377 3' -56.9 NC_004812.1 + 104676 0.66 0.88723
Target:  5'- gGGGGUGGGacAGGUcccacagcugGGCCGccGCcaugCGGGCg -3'
miRNA:   3'- gCCCUAUUU--UCCG----------UCGGC--CGa---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155640 0.66 0.88723
Target:  5'- uCGGGGgc--GGGCAcGCCGgGCUCcccuaGGCc -3'
miRNA:   3'- -GCCCUauuuUCCGU-CGGC-CGAGc----CCG- -5'
21377 3' -56.9 NC_004812.1 + 64156 0.66 0.88723
Target:  5'- gCGGGG----AGuGUcgGGUCGGgUCGGGCa -3'
miRNA:   3'- -GCCCUauuuUC-CG--UCGGCCgAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 30819 0.66 0.88723
Target:  5'- aCGGGGgggcAGGGCGGCgccaGGCgccgcccggGGGCg -3'
miRNA:   3'- -GCCCUauu-UUCCGUCGg---CCGag-------CCCG- -5'
21377 3' -56.9 NC_004812.1 + 128979 0.66 0.88723
Target:  5'- gCGGGcgGucgcgccgucAGcGCGGCgGGCcgCGGGCg -3'
miRNA:   3'- -GCCCuaUuu--------UC-CGUCGgCCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 19087 0.66 0.88723
Target:  5'- cCGGGccGAGcgcucGGGCu-CCGGCcgCGGGCc -3'
miRNA:   3'- -GCCCuaUUU-----UCCGucGGCCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 641 0.66 0.88723
Target:  5'- cCGGGAUc-GAGuGCGcccaccaacGCCGcGCcCGGGCg -3'
miRNA:   3'- -GCCCUAuuUUC-CGU---------CGGC-CGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 94123 0.66 0.88655
Target:  5'- gCGGGGccucgcgcacgucUGGAcgcAGGCcGCCGcGCUgGGGUu -3'
miRNA:   3'- -GCCCU-------------AUUU---UCCGuCGGC-CGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 125254 0.66 0.885868
Target:  5'- aGGcgcgcc-GGCGGCCcgGGCUCGcGGCg -3'
miRNA:   3'- gCCcuauuuuCCGUCGG--CCGAGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 156155 0.66 0.885868
Target:  5'- aGGcgcgcc-GGCGGCCcgGGCUCGcGGCg -3'
miRNA:   3'- gCCcuauuuuCCGUCGG--CCGAGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.