miRNA display CGI


Results 21 - 40 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 4208 0.7 0.675647
Target:  5'- gCGGGGaccgcGGCGGCgucgGGCUCGGGg -3'
miRNA:   3'- -GCCCUauuuuCCGUCGg---CCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 4416 0.66 0.87322
Target:  5'- uGGcGUAGcccAGGuGCGGCaCGGCgCGGGCc -3'
miRNA:   3'- gCCcUAUU---UUC-CGUCG-GCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 4656 0.68 0.800388
Target:  5'- gCGGGG--AGGGGCucGCCGGCcgUCGcGCg -3'
miRNA:   3'- -GCCCUauUUUCCGu-CGGCCG--AGCcCG- -5'
21377 3' -56.9 NC_004812.1 + 4749 0.73 0.496107
Target:  5'- cCGGGGgc---GGCGGCuCGGCgcCGGGCc -3'
miRNA:   3'- -GCCCUauuuuCCGUCG-GCCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 4783 0.74 0.458715
Target:  5'- uGGGggAGGGGGCggggcgagGGCUGGUgCGGGCg -3'
miRNA:   3'- gCCCuaUUUUCCG--------UCGGCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 4807 0.7 0.685699
Target:  5'- gCGGGcGUAGAAGGCGcccgaggccucGUCGGCguccagGGGCa -3'
miRNA:   3'- -GCCC-UAUUUUCCGU-----------CGGCCGag----CCCG- -5'
21377 3' -56.9 NC_004812.1 + 4943 0.78 0.271428
Target:  5'- gCGGcGcUGGAGGGCGGCCGGC--GGGCg -3'
miRNA:   3'- -GCC-CuAUUUUCCGUCGGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5015 0.7 0.685699
Target:  5'- gCGGGGgcggcagguGGGGCGGCaGGCg-GGGCa -3'
miRNA:   3'- -GCCCUauu------UUCCGUCGgCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5071 0.69 0.754348
Target:  5'- gCGGGAgacucGGGGGGCcggGGuCCGGC-CGGGg -3'
miRNA:   3'- -GCCCUa----UUUUCCG---UC-GGCCGaGCCCg -5'
21377 3' -56.9 NC_004812.1 + 5118 0.66 0.86515
Target:  5'- uGGGGUccGGGGGGCGGgCgcggaggcgggagGGCcgCGGGCc -3'
miRNA:   3'- gCCCUA--UUUUCCGUCgG-------------CCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5348 0.76 0.341126
Target:  5'- gGGGAggcccggGAGAGGCGGCaGaCUCGGGCu -3'
miRNA:   3'- gCCCUa------UUUUCCGUCGgCcGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5396 0.67 0.845895
Target:  5'- gCGGGGccGGGGGCGucGCCGGCcccgcggacgacggCGGGg -3'
miRNA:   3'- -GCCCUauUUUCCGU--CGGCCGa-------------GCCCg -5'
21377 3' -56.9 NC_004812.1 + 5605 0.75 0.380538
Target:  5'- gCGGGGUcccccAGGGGGCcggAGgCGGCUCGGGg -3'
miRNA:   3'- -GCCCUA-----UUUUCCG---UCgGCCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 5656 0.68 0.782361
Target:  5'- cCGGGcgcGAGGGgAGCCcGCagGGGCa -3'
miRNA:   3'- -GCCCuauUUUCCgUCGGcCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5784 0.68 0.782361
Target:  5'- gCGGGGUc---GGCGcCCGcCUCGGGCu -3'
miRNA:   3'- -GCCCUAuuuuCCGUcGGCcGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5809 0.7 0.655447
Target:  5'- gCGGGGcUGcgGGGCgcGGCgGGCUcugCGGGCc -3'
miRNA:   3'- -GCCCU-AUuuUCCG--UCGgCCGA---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5877 0.72 0.534814
Target:  5'- gCGGGccGGGGGGC-GCgGGCgCGGGCu -3'
miRNA:   3'- -GCCCuaUUUUCCGuCGgCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5990 0.72 0.574533
Target:  5'- gCGGGGUGGuAGGC-GCCGGg--GGGCg -3'
miRNA:   3'- -GCCCUAUUuUCCGuCGGCCgagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 6054 0.68 0.773144
Target:  5'- gCGGcGAggGGAAGGCGGCggaGGCgaagggGGGCg -3'
miRNA:   3'- -GCC-CUa-UUUUCCGUCGg--CCGag----CCCG- -5'
21377 3' -56.9 NC_004812.1 + 6111 0.75 0.380538
Target:  5'- aCGGGGgcGAcGGCGGCgGGCUgccggggaaggCGGGCg -3'
miRNA:   3'- -GCCCUauUUuCCGUCGgCCGA-----------GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.