miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 42 0.69 0.723424
Target:  5'- gGGGGUucguucgGGGGGGCgcguuugGGCgGGCUccCGGGCg -3'
miRNA:   3'- gCCCUA-------UUUUCCG-------UCGgCCGA--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 213 0.68 0.782361
Target:  5'- gCGGGG--AGGGGgGGCCcaaGGCUCccgcgGGGCc -3'
miRNA:   3'- -GCCCUauUUUCCgUCGG---CCGAG-----CCCG- -5'
21377 3' -56.9 NC_004812.1 + 641 0.66 0.88723
Target:  5'- cCGGGAUc-GAGuGCGcccaccaacGCCGcGCcCGGGCg -3'
miRNA:   3'- -GCCCUAuuUUC-CGU---------CGGC-CGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 833 0.7 0.695707
Target:  5'- gGGGGUccGGGGUGGCCGGgggucCUgGGGUc -3'
miRNA:   3'- gCCCUAuuUUCCGUCGGCC-----GAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 1232 0.68 0.809182
Target:  5'- cCGGGGUuccuGGCGGaCGGCUUGucugcGGCu -3'
miRNA:   3'- -GCCCUAuuuuCCGUCgGCCGAGC-----CCG- -5'
21377 3' -56.9 NC_004812.1 + 1288 0.71 0.645315
Target:  5'- gCGGGcgGuccGAGGGCGGUCcgagGGCgguccgCGGGCg -3'
miRNA:   3'- -GCCCuaU---UUUCCGUCGG----CCGa-----GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 1431 0.69 0.715558
Target:  5'- gCGGGG--AGGGGCcggGGCCgcgagGGC-CGGGCa -3'
miRNA:   3'- -GCCCUauUUUCCG---UCGG-----CCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 1990 0.71 0.645315
Target:  5'- aGGGGUGGcGGGUcccGCCGGCggucgcUCGGGg -3'
miRNA:   3'- gCCCUAUUuUCCGu--CGGCCG------AGCCCg -5'
21377 3' -56.9 NC_004812.1 + 2347 0.66 0.858362
Target:  5'- gCGGGcgGcAGGGCgucgGGcCCGGCgcgCGcGGCg -3'
miRNA:   3'- -GCCCuaUuUUCCG----UC-GGCCGa--GC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 2506 0.75 0.397133
Target:  5'- gCGGGcgAGucGGCGGCgCGGCcgucgagcgCGGGCa -3'
miRNA:   3'- -GCCCuaUUuuCCGUCG-GCCGa--------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 2777 0.67 0.842701
Target:  5'- gCGcGGc----GGGCAGCaCGGCgcaGGGCa -3'
miRNA:   3'- -GC-CCuauuuUCCGUCG-GCCGag-CCCG- -5'
21377 3' -56.9 NC_004812.1 + 3100 0.73 0.52503
Target:  5'- gCGGGGcggGGGAGGCGccGCCGaGCUccucgcCGGGCa -3'
miRNA:   3'- -GCCCUa--UUUUCCGU--CGGC-CGA------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 3171 0.69 0.729291
Target:  5'- uCGGGGUcgGcgaccuggcgcauccAGGCGGCggcgCGGCgcagCGGGCc -3'
miRNA:   3'- -GCCCUAuuU---------------UCCGUCG----GCCGa---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 3232 0.81 0.183834
Target:  5'- gCGGGccGAAGGcGCGGCCggagccgGGCUCGGGCg -3'
miRNA:   3'- -GCCCuaUUUUC-CGUCGG-------CCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 3301 0.67 0.826288
Target:  5'- gCGGGuc-GAAGGCgAGCgCGGCgcgccaggccUCGGGg -3'
miRNA:   3'- -GCCCuauUUUCCG-UCG-GCCG----------AGCCCg -5'
21377 3' -56.9 NC_004812.1 + 3396 0.69 0.754348
Target:  5'- gCGGcGGcGGAGGGC-GCCGGCguguggcUGGGCc -3'
miRNA:   3'- -GCC-CUaUUUUCCGuCGGCCGa------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 3471 0.66 0.88723
Target:  5'- gCGGGcgGucgcgccgucAGcGCGGCgGGCcgCGGGCg -3'
miRNA:   3'- -GCCCuaUuu--------UC-CGUCGgCCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 3529 0.73 0.528936
Target:  5'- cCGGGGgc-GGGGCcgcggcgccgGGCCGGCUcuucuugcgcgccggCGGGCa -3'
miRNA:   3'- -GCCCUauuUUCCG----------UCGGCCGA---------------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 3904 0.67 0.850628
Target:  5'- gCGGGcgc---GGCGGCgCGGCggCGGGg -3'
miRNA:   3'- -GCCCuauuuuCCGUCG-GCCGa-GCCCg -5'
21377 3' -56.9 NC_004812.1 + 4127 0.67 0.817818
Target:  5'- gCGGGGcccucgucggAGAGGGCGGCCGccaggcggcGCUgCGcGGCg -3'
miRNA:   3'- -GCCCUa---------UUUUCCGUCGGC---------CGA-GC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.