miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 156452 0.69 0.723424
Target:  5'- gGGGGUucguucgGGGGGGCgcguuugGGCgGGCUccCGGGCg -3'
miRNA:   3'- gCCCUA-------UUUUCCG-------UCGgCCGA--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 156193 0.69 0.754348
Target:  5'- gGGGAggggGGGAGGgGGCCG-CUgGGGa -3'
miRNA:   3'- gCCCUa---UUUUCCgUCGGCcGAgCCCg -5'
21377 3' -56.9 NC_004812.1 + 156155 0.66 0.885868
Target:  5'- aGGcgcgcc-GGCGGCCcgGGCUCGcGGCg -3'
miRNA:   3'- gCCcuauuuuCCGUCGG--CCGAGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 156123 0.7 0.695707
Target:  5'- cCGGGAgAAGGGGUgacgGGCCGcGCggacgCGGGg -3'
miRNA:   3'- -GCCCUaUUUUCCG----UCGGC-CGa----GCCCg -5'
21377 3' -56.9 NC_004812.1 + 156109 0.67 0.850628
Target:  5'- cCGGccgc---GGCGGCCGugaGUUCGGGCa -3'
miRNA:   3'- -GCCcuauuuuCCGUCGGC---CGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 156068 0.73 0.486625
Target:  5'- cCGGGGcGGGAGGCgggagGGCCcgGGCgcgCGGGCc -3'
miRNA:   3'- -GCCCUaUUUUCCG-----UCGG--CCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 156029 0.68 0.773144
Target:  5'- cCGGGGccGGGGGCcGCgccgCGGgaCGGGCg -3'
miRNA:   3'- -GCCCUauUUUCCGuCG----GCCgaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155985 0.66 0.858362
Target:  5'- uCGGGGUu----GCAGCCcgcguGCUCGcGGCg -3'
miRNA:   3'- -GCCCUAuuuucCGUCGGc----CGAGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 155885 0.84 0.122808
Target:  5'- gGGGAgggGAGGGGCggGGCCGGCgccCGGGCu -3'
miRNA:   3'- gCCCUa--UUUUCCG--UCGGCCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155730 0.75 0.405603
Target:  5'- gGGGGUGGGGGGCGcgcGCgGGCg-GGGCu -3'
miRNA:   3'- gCCCUAUUUUCCGU---CGgCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155679 0.68 0.809182
Target:  5'- cCGGGAgcgc---CGGCgGGCUCGGcGCg -3'
miRNA:   3'- -GCCCUauuuuccGUCGgCCGAGCC-CG- -5'
21377 3' -56.9 NC_004812.1 + 155640 0.66 0.88723
Target:  5'- uCGGGGgc--GGGCAcGCCGgGCUCcccuaGGCc -3'
miRNA:   3'- -GCCCUauuuUCCGU-CGGC-CGAGc----CCG- -5'
21377 3' -56.9 NC_004812.1 + 155602 0.68 0.763804
Target:  5'- gCGGGGgcgc-GGCc-CCGGC-CGGGCa -3'
miRNA:   3'- -GCCCUauuuuCCGucGGCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155567 0.74 0.467925
Target:  5'- aGGGggGAGGGGCGcgcGCgGGCggcCGGGCc -3'
miRNA:   3'- gCCCuaUUUUCCGU---CGgCCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155481 0.71 0.593649
Target:  5'- gGGGAgccu-GGCGGCCGGCuucugccUCGccGGCg -3'
miRNA:   3'- gCCCUauuuuCCGUCGGCCG-------AGC--CCG- -5'
21377 3' -56.9 NC_004812.1 + 155452 0.68 0.763804
Target:  5'- aGGGAgc--GGGgGGCCGGgCUCGcGCc -3'
miRNA:   3'- gCCCUauuuUCCgUCGGCC-GAGCcCG- -5'
21377 3' -56.9 NC_004812.1 + 155284 0.68 0.763804
Target:  5'- cCGGGG--AGGGGCggGGCgCGGCg-GGGCc -3'
miRNA:   3'- -GCCCUauUUUCCG--UCG-GCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155212 0.69 0.715558
Target:  5'- uGGcGGcGAGAGGgGGCgCGGCgcggggCGGGCc -3'
miRNA:   3'- gCC-CUaUUUUCCgUCG-GCCGa-----GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155153 0.66 0.858362
Target:  5'- cCGGGuc-GAGGGCGGUCG-UggGGGCg -3'
miRNA:   3'- -GCCCuauUUUCCGUCGGCcGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155077 0.68 0.782361
Target:  5'- aGGGggGGGGGGCGGCggCGGCaugcccucgCGcGGCg -3'
miRNA:   3'- gCCCuaUUUUCCGUCG--GCCGa--------GC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.