miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 117197 1.12 0.001462
Target:  5'- cCGGGAUAAAAGGCAGCCGGCUCGGGCg -3'
miRNA:   3'- -GCCCUAUUUUCCGUCGGCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 148098 1.12 0.001462
Target:  5'- cCGGGAUAAAAGGCAGCCGGCUCGGGCg -3'
miRNA:   3'- -GCCCUAUUUUCCGUCGGCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 30377 0.84 0.122808
Target:  5'- gGGGAgggGAGGGGCggGGCCGGCgccCGGGCu -3'
miRNA:   3'- gCCCUa--UUUUCCG--UCGGCCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155885 0.84 0.122808
Target:  5'- gGGGAgggGAGGGGCggGGCCGGCgccCGGGCu -3'
miRNA:   3'- gCCCUa--UUUUCCG--UCGGCCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 78788 0.83 0.143247
Target:  5'- uGGGGUcgGGGGuCGGCCGGCUgGGGUc -3'
miRNA:   3'- gCCCUAuuUUCC-GUCGGCCGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 78710 0.83 0.143247
Target:  5'- uGGGGUcgGGGGuCGGCCGGCUgGGGUc -3'
miRNA:   3'- gCCCUAuuUUCC-GUCGGCCGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 59652 0.83 0.143247
Target:  5'- gGGGAUGAGAcGGacgGGCCGGCgCGGGCg -3'
miRNA:   3'- gCCCUAUUUU-CCg--UCGGCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 83200 0.82 0.166753
Target:  5'- gCGGGAggcgcGGCGGCCGcGCUCGGGg -3'
miRNA:   3'- -GCCCUauuuuCCGUCGGC-CGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 3232 0.81 0.183834
Target:  5'- gCGGGccGAAGGcGCGGCCggagccgGGCUCGGGCg -3'
miRNA:   3'- -GCCCuaUUUUC-CGUCGG-------CCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 123560 0.81 0.184292
Target:  5'- cCGGGGcGAgcGAGGCGGCgCGGC-CGGGCu -3'
miRNA:   3'- -GCCCUaUU--UUCCGUCG-GCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 154461 0.81 0.184292
Target:  5'- cCGGGGcGAgcGAGGCGGCgCGGC-CGGGCu -3'
miRNA:   3'- -GCCCUaUU--UUCCGUCG-GCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 56394 0.81 0.188924
Target:  5'- uGGGcgacgAGGAGGCGGCCGcGCUCcGGGCc -3'
miRNA:   3'- gCCCua---UUUUCCGUCGGC-CGAG-CCCG- -5'
21377 3' -56.9 NC_004812.1 + 19681 0.81 0.188924
Target:  5'- gCGGGGacGAGGGCGGCCcggucGGcCUCGGGCc -3'
miRNA:   3'- -GCCCUauUUUCCGUCGG-----CC-GAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 112710 0.79 0.224292
Target:  5'- cCGGcGG-AGAGGGCGGCCGGCcgcggcCGGGCg -3'
miRNA:   3'- -GCC-CUaUUUUCCGUCGGCCGa-----GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 54729 0.79 0.224292
Target:  5'- gGGGAggGGGAGGgGGCCGGCgCGGGg -3'
miRNA:   3'- gCCCUa-UUUUCCgUCGGCCGaGCCCg -5'
21377 3' -56.9 NC_004812.1 + 142396 0.79 0.241098
Target:  5'- gGGGAUAAAGGGCGcCCGGCccuggCGcGGCg -3'
miRNA:   3'- gCCCUAUUUUCCGUcGGCCGa----GC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 59966 0.78 0.258943
Target:  5'- aCGGGGUcgcgcGGC-GCCGGCUCGuGGCg -3'
miRNA:   3'- -GCCCUAuuuu-CCGuCGGCCGAGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 108277 0.78 0.258943
Target:  5'- uGGGAacGGAGGCgGGCgGGgUCGGGCa -3'
miRNA:   3'- gCCCUauUUUCCG-UCGgCCgAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 79018 0.78 0.258943
Target:  5'- gGGGGUuGGGGGuCGGCUGGCUgGGGUc -3'
miRNA:   3'- gCCCUAuUUUCC-GUCGGCCGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 32677 0.78 0.265126
Target:  5'- gCGGGA--GGAGGCcgGGCCGGCccgggaccgCGGGCg -3'
miRNA:   3'- -GCCCUauUUUCCG--UCGGCCGa--------GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.