miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 6538 0.66 0.857597
Target:  5'- gCGGGGggccgAGGGGGCuGCCGcgagucGCUuaggcaagaacggCGGGCg -3'
miRNA:   3'- -GCCCUa----UUUUCCGuCGGC------CGA-------------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 94304 0.66 0.856831
Target:  5'- uGGGugcgcuuGGUcGCCGGCUgCGcGGCg -3'
miRNA:   3'- gCCCuauuuu-CCGuCGGCCGA-GC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 154951 0.66 0.865894
Target:  5'- gCGGGggGGGGGGgAGggGGgaCGGGCg -3'
miRNA:   3'- -GCCCuaUUUUCCgUCggCCgaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 149084 0.66 0.858362
Target:  5'- uGGGcggGAGGGGCGGCgCGccGCg-GGGCg -3'
miRNA:   3'- gCCCua-UUUUCCGUCG-GC--CGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 124252 0.66 0.858362
Target:  5'- cCGGGuc-GAGGGCGGUCG-UggGGGCg -3'
miRNA:   3'- -GCCCuauUUUCCGUCGGCcGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 155985 0.66 0.858362
Target:  5'- uCGGGGUu----GCAGCCcgcguGCUCGcGGCg -3'
miRNA:   3'- -GCCCUAuuuucCGUCGGc----CGAGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 15052 0.66 0.865894
Target:  5'- cCGGGAccuGGAGGCGGaCUGGC---GGCg -3'
miRNA:   3'- -GCCCUau-UUUCCGUC-GGCCGagcCCG- -5'
21377 3' -56.9 NC_004812.1 + 122133 0.66 0.858362
Target:  5'- uGGGc---GAGGaCGGCCugGGCgCGGGCc -3'
miRNA:   3'- gCCCuauuUUCC-GUCGG--CCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 95562 0.66 0.858362
Target:  5'- gCGGGGUcGAgcGGGCuaaccgcacGGCCGcGCccgcgcgCGGGCg -3'
miRNA:   3'- -GCCCUAuUU--UCCG---------UCGGC-CGa------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 101200 0.66 0.858362
Target:  5'- gCGGGGccAGGGGCcccgcGGCCGccaGCagGGGCg -3'
miRNA:   3'- -GCCCUauUUUCCG-----UCGGC---CGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 147473 0.66 0.858362
Target:  5'- gGGGAUAGAgcaGGGCGaCCguGGCgccgCGGGg -3'
miRNA:   3'- gCCCUAUUU---UCCGUcGG--CCGa---GCCCg -5'
21377 3' -56.9 NC_004812.1 + 71482 0.66 0.858362
Target:  5'- gCGGGcgcAGGGGCAGCaggGGCagcagGGGCa -3'
miRNA:   3'- -GCCCuauUUUCCGUCGg--CCGag---CCCG- -5'
21377 3' -56.9 NC_004812.1 + 5118 0.66 0.86515
Target:  5'- uGGGGUccGGGGGGCGGgCgcggaggcgggagGGCcgCGGGCc -3'
miRNA:   3'- gCCCUA--UUUUCCGUCgG-------------CCGa-GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 43064 0.66 0.865894
Target:  5'- gGGGGUGcGGGGGCGGUgGGggugCGGGg -3'
miRNA:   3'- gCCCUAU-UUUCCGUCGgCCga--GCCCg -5'
21377 3' -56.9 NC_004812.1 + 43030 0.66 0.865894
Target:  5'- gGGGGUGcGGGGGCGGUgGGggugCGGGg -3'
miRNA:   3'- gCCCUAU-UUUCCGUCGgCCga--GCCCg -5'
21377 3' -56.9 NC_004812.1 + 112300 0.66 0.896513
Target:  5'- cCGGGccGAGcucgagucgcgccucGGGCGGCUGGCcgCGGagGCg -3'
miRNA:   3'- -GCCCuaUUU---------------UCCGUCGGCCGa-GCC--CG- -5'
21377 3' -56.9 NC_004812.1 + 90960 0.66 0.858362
Target:  5'- gCGGGGcuccgguAGGGGCuccaCCGGCUCGaGCg -3'
miRNA:   3'- -GCCCUau-----UUUCCGuc--GGCCGAGCcCG- -5'
21377 3' -56.9 NC_004812.1 + 20602 0.66 0.858362
Target:  5'- gCGGGc---GGGGC-GCCcGCUCaGGGCg -3'
miRNA:   3'- -GCCCuauuUUCCGuCGGcCGAG-CCCG- -5'
21377 3' -56.9 NC_004812.1 + 127855 0.66 0.858362
Target:  5'- gCGGGcgGcAGGGCgucgGGcCCGGCgcgCGcGGCg -3'
miRNA:   3'- -GCCCuaUuUUCCG----UC-GGCCGa--GC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 42996 0.66 0.865894
Target:  5'- gGGGGUGcGGGGGCGGUgGGggugCGGGg -3'
miRNA:   3'- gCCCUAU-UUUCCGUCGgCCga--GCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.