miRNA display CGI


Results 21 - 40 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 122133 0.66 0.858362
Target:  5'- uGGGc---GAGGaCGGCCugGGCgCGGGCc -3'
miRNA:   3'- gCCCuauuUUCC-GUCGG--CCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 142295 0.66 0.880334
Target:  5'- -uGGAc-GAGGGCcccgGGCCGGCgcggCGGGg -3'
miRNA:   3'- gcCCUauUUUCCG----UCGGCCGa---GCCCg -5'
21377 3' -56.9 NC_004812.1 + 95562 0.66 0.858362
Target:  5'- gCGGGGUcGAgcGGGCuaaccgcacGGCCGcGCccgcgcgCGGGCg -3'
miRNA:   3'- -GCCCUAuUU--UCCG---------UCGGC-CGa------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 25347 0.66 0.87322
Target:  5'- cCGGcGGUGGGcggcgaccacGGGCucGCCGGCguccgCGGGa -3'
miRNA:   3'- -GCC-CUAUUU----------UCCGu-CGGCCGa----GCCCg -5'
21377 3' -56.9 NC_004812.1 + 154951 0.66 0.865894
Target:  5'- gCGGGggGGGGGGgAGggGGgaCGGGCg -3'
miRNA:   3'- -GCCCuaUUUUCCgUCggCCgaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 126741 0.66 0.880334
Target:  5'- cCGGGGUccu-GGCGGaCGGCUUGucugcGGCu -3'
miRNA:   3'- -GCCCUAuuuuCCGUCgGCCGAGC-----CCG- -5'
21377 3' -56.9 NC_004812.1 + 127855 0.66 0.858362
Target:  5'- gCGGGcgGcAGGGCgucgGGcCCGGCgcgCGcGGCg -3'
miRNA:   3'- -GCCCuaUuUUCCG----UC-GGCCGa--GC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 149084 0.66 0.858362
Target:  5'- uGGGcggGAGGGGCGGCgCGccGCg-GGGCg -3'
miRNA:   3'- gCCCua-UUUUCCGUCG-GC--CGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 135793 0.66 0.87322
Target:  5'- aCGcGGAUGGugacGAGGCGGgCGcCgacgCGGGCg -3'
miRNA:   3'- -GC-CCUAUU----UUCCGUCgGCcGa---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 42260 0.66 0.87322
Target:  5'- gGGGAgcaggccuGGAGGCuGuUCGGUagcgCGGGCg -3'
miRNA:   3'- gCCCUau------UUUCCGuC-GGCCGa---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 129740 0.66 0.865894
Target:  5'- cCGGGGgcGgcGGCGGCggCGGCggCGGcGCc -3'
miRNA:   3'- -GCCCUauUuuCCGUCG--GCCGa-GCC-CG- -5'
21377 3' -56.9 NC_004812.1 + 104151 0.66 0.880334
Target:  5'- cCGGu-----AGGCGGCaggaGGCgacgCGGGCg -3'
miRNA:   3'- -GCCcuauuuUCCGUCGg---CCGa---GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 150853 0.66 0.880334
Target:  5'- gGGGAgagGAGAGG-GGCCGGa--GGcGCg -3'
miRNA:   3'- gCCCUa--UUUUCCgUCGGCCgagCC-CG- -5'
21377 3' -56.9 NC_004812.1 + 98651 0.66 0.880334
Target:  5'- cCGGGcgcGAcgcgcgcacgcgGGGGUcgAGCCGGggCGGGCg -3'
miRNA:   3'- -GCCCua-UU------------UUCCG--UCGGCCgaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 15052 0.66 0.865894
Target:  5'- cCGGGAccuGGAGGCGGaCUGGC---GGCg -3'
miRNA:   3'- -GCCCUau-UUUCCGUC-GGCCGagcCCG- -5'
21377 3' -56.9 NC_004812.1 + 98498 0.66 0.865894
Target:  5'- uGGGGcGGcgcGGGGC-GCCGGgUccCGGGCg -3'
miRNA:   3'- gCCCUaUU---UUCCGuCGGCCgA--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 30376 0.66 0.865894
Target:  5'- ---------cGGCGGCCGGgUCGGGg -3'
miRNA:   3'- gcccuauuuuCCGUCGGCCgAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 129924 0.66 0.87322
Target:  5'- uGGcGUAGcccAGGuGCGGCaCGGCgCGGGCc -3'
miRNA:   3'- gCCcUAUU---UUC-CGUCG-GCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 6830 0.66 0.87322
Target:  5'- -uGGGUGGGGGGCGG-CGGCccUCGcGGUc -3'
miRNA:   3'- gcCCUAUUUUCCGUCgGCCG--AGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 155985 0.66 0.858362
Target:  5'- uCGGGGUu----GCAGCCcgcguGCUCGcGGCg -3'
miRNA:   3'- -GCCCUAuuuucCGUCGGc----CGAGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.