miRNA display CGI


Results 21 - 40 of 563 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 4943 0.78 0.271428
Target:  5'- gCGGcGcUGGAGGGCGGCCGGC--GGGCg -3'
miRNA:   3'- -GCC-CuAUUUUCCGUCGGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 10479 0.78 0.271428
Target:  5'- gGGGAccgcGGGGGGgAGUCGGCUCGGGg -3'
miRNA:   3'- gCCCUa---UUUUCCgUCGGCCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 130451 0.78 0.271428
Target:  5'- gCGGcGcUGGAGGGCGGCCGGC--GGGCg -3'
miRNA:   3'- -GCC-CuAUUUUCCGUCGGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 25447 0.78 0.284394
Target:  5'- gCGGGGUuu-AGGCAGCCGugguggucGCgCGGGCa -3'
miRNA:   3'- -GCCCUAuuuUCCGUCGGC--------CGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 100127 0.77 0.297843
Target:  5'- gGGGAgGGGAGGCGuGgCGGCgCGGGCg -3'
miRNA:   3'- gCCCUaUUUUCCGU-CgGCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 71245 0.77 0.304751
Target:  5'- gCGGGGacGgcGGCggugGGCCGGCUCGGGg -3'
miRNA:   3'- -GCCCUauUuuCCG----UCGGCCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 143953 0.77 0.311781
Target:  5'- gCGGGGUGGGAGG-AGCgCGGgaUGGGCa -3'
miRNA:   3'- -GCCCUAUUUUCCgUCG-GCCgaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 71046 0.77 0.311781
Target:  5'- uGGGG---AGGGCGGCCgccccugcggcGGUUCGGGCg -3'
miRNA:   3'- gCCCUauuUUCCGUCGG-----------CCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 67767 0.77 0.318934
Target:  5'- cCGGGggAGgcGGCGGCCcggGGCgCGGGCg -3'
miRNA:   3'- -GCCCuaUUuuCCGUCGG---CCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 98041 0.76 0.332117
Target:  5'- cCGGGucgggcucGGGC-GCCGGCUCGGGg -3'
miRNA:   3'- -GCCCuauuu---UCCGuCGGCCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 121941 0.76 0.341126
Target:  5'- cCGGGggGGAcuuGGGCGGCgGGCU-GGGCc -3'
miRNA:   3'- -GCCCuaUUU---UCCGUCGgCCGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 36249 0.76 0.341126
Target:  5'- gGGGAggcccggGAGAGGCGGCaGaCUCGGGCu -3'
miRNA:   3'- gCCCUa------UUUUCCGUCGgCcGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 152842 0.76 0.341126
Target:  5'- cCGGGggGGAcuuGGGCGGCgGGCU-GGGCc -3'
miRNA:   3'- -GCCCuaUUU---UCCGUCGgCCGAgCCCG- -5'
21377 3' -56.9 NC_004812.1 + 5348 0.76 0.341126
Target:  5'- gGGGAggcccggGAGAGGCGGCaGaCUCGGGCu -3'
miRNA:   3'- gCCCUa------UUUUCCGUCGgCcGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 52282 0.76 0.346462
Target:  5'- gGGGAUGGgcggagaaggucacGGGGCccGGCCGGCgUCGGGg -3'
miRNA:   3'- gCCCUAUU--------------UUCCG--UCGGCCG-AGCCCg -5'
21377 3' -56.9 NC_004812.1 + 128738 0.76 0.348767
Target:  5'- gCGGcGGccGAAGGCgcggccggAGCCgGGCUCGGGCg -3'
miRNA:   3'- -GCC-CUauUUUCCG--------UCGG-CCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 54773 0.76 0.348767
Target:  5'- gCGGGcgGcuacGGGGGCGGCUGG-UCGGGCc -3'
miRNA:   3'- -GCCCuaU----UUUCCGUCGGCCgAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 29340 0.76 0.348767
Target:  5'- gCGGGGcgcggcugcgAGGGGGC-GCgGGCUCGGGCc -3'
miRNA:   3'- -GCCCUa---------UUUUCCGuCGgCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 154848 0.76 0.348767
Target:  5'- gCGGGGcgcggcugcgAGGGGGC-GCgGGCUCGGGCc -3'
miRNA:   3'- -GCCCUa---------UUUUCCGuCGgCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 137049 0.76 0.35653
Target:  5'- cCGGGGU----GGUGGCCGGCcUGGGCu -3'
miRNA:   3'- -GCCCUAuuuuCCGUCGGCCGaGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.