Results 1 - 20 of 563 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21377 | 3' | -56.9 | NC_004812.1 | + | 121941 | 0.76 | 0.341126 |
Target: 5'- cCGGGggGGAcuuGGGCGGCgGGCU-GGGCc -3' miRNA: 3'- -GCCCuaUUU---UCCGUCGgCCGAgCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 25447 | 0.78 | 0.284394 |
Target: 5'- gCGGGGUuu-AGGCAGCCGugguggucGCgCGGGCa -3' miRNA: 3'- -GCCCUAuuuUCCGUCGGC--------CGaGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 100127 | 0.77 | 0.297843 |
Target: 5'- gGGGAgGGGAGGCGuGgCGGCgCGGGCg -3' miRNA: 3'- gCCCUaUUUUCCGU-CgGCCGaGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 71245 | 0.77 | 0.304751 |
Target: 5'- gCGGGGacGgcGGCggugGGCCGGCUCGGGg -3' miRNA: 3'- -GCCCUauUuuCCG----UCGGCCGAGCCCg -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 71046 | 0.77 | 0.311781 |
Target: 5'- uGGGG---AGGGCGGCCgccccugcggcGGUUCGGGCg -3' miRNA: 3'- gCCCUauuUUCCGUCGG-----------CCGAGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 143953 | 0.77 | 0.311781 |
Target: 5'- gCGGGGUGGGAGG-AGCgCGGgaUGGGCa -3' miRNA: 3'- -GCCCUAUUUUCCgUCG-GCCgaGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 67767 | 0.77 | 0.318934 |
Target: 5'- cCGGGggAGgcGGCGGCCcggGGCgCGGGCg -3' miRNA: 3'- -GCCCuaUUuuCCGUCGG---CCGaGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 98041 | 0.76 | 0.332117 |
Target: 5'- cCGGGucgggcucGGGC-GCCGGCUCGGGg -3' miRNA: 3'- -GCCCuauuu---UCCGuCGGCCGAGCCCg -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 5348 | 0.76 | 0.341126 |
Target: 5'- gGGGAggcccggGAGAGGCGGCaGaCUCGGGCu -3' miRNA: 3'- gCCCUa------UUUUCCGUCGgCcGAGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 130451 | 0.78 | 0.271428 |
Target: 5'- gCGGcGcUGGAGGGCGGCCGGC--GGGCg -3' miRNA: 3'- -GCC-CuAUUUUCCGUCGGCCGagCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 32677 | 0.78 | 0.265126 |
Target: 5'- gCGGGA--GGAGGCcgGGCCGGCccgggaccgCGGGCg -3' miRNA: 3'- -GCCCUauUUUCCG--UCGGCCGa--------GCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 108277 | 0.78 | 0.258943 |
Target: 5'- uGGGAacGGAGGCgGGCgGGgUCGGGCa -3' miRNA: 3'- gCCCUauUUUCCG-UCGgCCgAGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 155885 | 0.84 | 0.122808 |
Target: 5'- gGGGAgggGAGGGGCggGGCCGGCgccCGGGCu -3' miRNA: 3'- gCCCUa--UUUUCCG--UCGGCCGa--GCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 78710 | 0.83 | 0.143247 |
Target: 5'- uGGGGUcgGGGGuCGGCCGGCUgGGGUc -3' miRNA: 3'- gCCCUAuuUUCC-GUCGGCCGAgCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 78788 | 0.83 | 0.143247 |
Target: 5'- uGGGGUcgGGGGuCGGCCGGCUgGGGUc -3' miRNA: 3'- gCCCUAuuUUCC-GUCGGCCGAgCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 123560 | 0.81 | 0.184292 |
Target: 5'- cCGGGGcGAgcGAGGCGGCgCGGC-CGGGCu -3' miRNA: 3'- -GCCCUaUU--UUCCGUCG-GCCGaGCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 54729 | 0.79 | 0.224292 |
Target: 5'- gGGGAggGGGAGGgGGCCGGCgCGGGg -3' miRNA: 3'- gCCCUa-UUUUCCgUCGGCCGaGCCCg -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 112710 | 0.79 | 0.224292 |
Target: 5'- cCGGcGG-AGAGGGCGGCCGGCcgcggcCGGGCg -3' miRNA: 3'- -GCC-CUaUUUUCCGUCGGCCGa-----GCCCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 142396 | 0.79 | 0.241098 |
Target: 5'- gGGGAUAAAGGGCGcCCGGCccuggCGcGGCg -3' miRNA: 3'- gCCCUAUUUUCCGUcGGCCGa----GC-CCG- -5' |
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21377 | 3' | -56.9 | NC_004812.1 | + | 79018 | 0.78 | 0.258943 |
Target: 5'- gGGGGUuGGGGGuCGGCUGGCUgGGGUc -3' miRNA: 3'- gCCCUAuUUUCC-GUCGGCCGAgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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