miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21377 3' -56.9 NC_004812.1 + 148098 1.12 0.001462
Target:  5'- cCGGGAUAAAAGGCAGCCGGCUCGGGCg -3'
miRNA:   3'- -GCCCUAUUUUCCGUCGGCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 36506 0.75 0.380538
Target:  5'- gCGGGGUcccccAGGGGGCcggAGgCGGCUCGGGg -3'
miRNA:   3'- -GCCCUA-----UUUUCCG---UCgGCCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 40082 0.75 0.388777
Target:  5'- cCGGGcgGc-GGGCGGCgGGCggcCGGGCg -3'
miRNA:   3'- -GCCCuaUuuUCCGUCGgCCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 112300 0.66 0.896513
Target:  5'- cCGGGccGAGcucgagucgcgccucGGGCGGCUGGCcgCGGagGCg -3'
miRNA:   3'- -GCCCuaUUU---------------UCCGUCGGCCGa-GCC--CG- -5'
21377 3' -56.9 NC_004812.1 + 3232 0.81 0.183834
Target:  5'- gCGGGccGAAGGcGCGGCCggagccgGGCUCGGGCg -3'
miRNA:   3'- -GCCCuaUUUUC-CGUCGG-------CCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 154461 0.81 0.184292
Target:  5'- cCGGGGcGAgcGAGGCGGCgCGGC-CGGGCu -3'
miRNA:   3'- -GCCCUaUU--UUCCGUCG-GCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 56394 0.81 0.188924
Target:  5'- uGGGcgacgAGGAGGCGGCCGcGCUCcGGGCc -3'
miRNA:   3'- gCCCua---UUUUCCGUCGGC-CGAG-CCCG- -5'
21377 3' -56.9 NC_004812.1 + 59966 0.78 0.258943
Target:  5'- aCGGGGUcgcgcGGC-GCCGGCUCGuGGCg -3'
miRNA:   3'- -GCCCUAuuuu-CCGuCGGCCGAGC-CCG- -5'
21377 3' -56.9 NC_004812.1 + 36249 0.76 0.341126
Target:  5'- gGGGAggcccggGAGAGGCGGCaGaCUCGGGCu -3'
miRNA:   3'- gCCCUa------UUUUCCGUCGgCcGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 81792 0.76 0.372416
Target:  5'- uGGGAc--GAGGUgugGGCgCGGUUCGGGCg -3'
miRNA:   3'- gCCCUauuUUCCG---UCG-GCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 52282 0.76 0.346462
Target:  5'- gGGGAUGGgcggagaaggucacGGGGCccGGCCGGCgUCGGGg -3'
miRNA:   3'- gCCCUAUU--------------UUCCG--UCGGCCG-AGCCCg -5'
21377 3' -56.9 NC_004812.1 + 4943 0.78 0.271428
Target:  5'- gCGGcGcUGGAGGGCGGCCGGC--GGGCg -3'
miRNA:   3'- -GCC-CuAUUUUCCGUCGGCCGagCCCG- -5'
21377 3' -56.9 NC_004812.1 + 30377 0.84 0.122808
Target:  5'- gGGGAgggGAGGGGCggGGCCGGCgccCGGGCu -3'
miRNA:   3'- gCCCUa--UUUUCCG--UCGGCCGa--GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 29340 0.76 0.348767
Target:  5'- gCGGGGcgcggcugcgAGGGGGC-GCgGGCUCGGGCc -3'
miRNA:   3'- -GCCCUa---------UUUUCCGuCGgCCGAGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 59652 0.83 0.143247
Target:  5'- gGGGAUGAGAcGGacgGGCCGGCgCGGGCg -3'
miRNA:   3'- gCCCUAUUUU-CCg--UCGGCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 10479 0.78 0.271428
Target:  5'- gGGGAccgcGGGGGGgAGUCGGCUCGGGg -3'
miRNA:   3'- gCCCUa---UUUUCCgUCGGCCGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 23485 0.76 0.364413
Target:  5'- aGGGAaGGAGGGUgugcGGCgGGC-CGGGCg -3'
miRNA:   3'- gCCCUaUUUUCCG----UCGgCCGaGCCCG- -5'
21377 3' -56.9 NC_004812.1 + 37012 0.75 0.380538
Target:  5'- aCGGGGgcGAcGGCGGCgGGCUgccggggaaggCGGGCg -3'
miRNA:   3'- -GCCCUauUUuCCGUCGgCCGA-----------GCCCG- -5'
21377 3' -56.9 NC_004812.1 + 83200 0.82 0.166753
Target:  5'- gCGGGAggcgcGGCGGCCGcGCUCGGGg -3'
miRNA:   3'- -GCCCUauuuuCCGUCGGC-CGAGCCCg -5'
21377 3' -56.9 NC_004812.1 + 19681 0.81 0.188924
Target:  5'- gCGGGGacGAGGGCGGCCcggucGGcCUCGGGCc -3'
miRNA:   3'- -GCCCUauUUUCCGUCGG-----CC-GAGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.