miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 32570 0.66 0.847662
Target:  5'- ----uUGGCCGCGg--CgCCGCGGCCc -3'
miRNA:   3'- cuuguACCGGCGCagaG-GGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 35341 0.69 0.705013
Target:  5'- --cCcgGGCCGCGUgUCCCcgcccgaguaccccgGCGACCc -3'
miRNA:   3'- cuuGuaCCGGCGCAgAGGG---------------CGUUGGu -5'
21378 3' -57 NC_004812.1 + 36204 0.74 0.453151
Target:  5'- uGAGCGcGGCCGCGUCgccCUCGCggUCGc -3'
miRNA:   3'- -CUUGUaCCGGCGCAGa--GGGCGuuGGU- -5'
21378 3' -57 NC_004812.1 + 36917 0.73 0.462354
Target:  5'- gGGACGguGCCGCcagCUCCCGCAGCCc -3'
miRNA:   3'- -CUUGUacCGGCGca-GAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 38892 0.66 0.863163
Target:  5'- cGGGCGccGGUCagggggGCG-CUCCCGCGACCc -3'
miRNA:   3'- -CUUGUa-CCGG------CGCaGAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 39108 0.71 0.619827
Target:  5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3'
miRNA:   3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 40101 0.74 0.426156
Target:  5'- cGGCcgGGCgCGCGUCcgUCCGCGACCc -3'
miRNA:   3'- cUUGuaCCG-GCGCAGa-GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 40410 0.66 0.870607
Target:  5'- cGAGCcaGGCCGCGUaguagCCCGCcACg- -3'
miRNA:   3'- -CUUGuaCCGGCGCAga---GGGCGuUGgu -5'
21378 3' -57 NC_004812.1 + 41836 0.77 0.306768
Target:  5'- -uGCAUGGCCGCGgcggUCCC-CAACCAa -3'
miRNA:   3'- cuUGUACCGGCGCag--AGGGcGUUGGU- -5'
21378 3' -57 NC_004812.1 + 42187 0.71 0.609636
Target:  5'- cGAGCG-GGCCcugggcgagGCGUCUCCCGUugacuACCu -3'
miRNA:   3'- -CUUGUaCCGG---------CGCAGAGGGCGu----UGGu -5'
21378 3' -57 NC_004812.1 + 42603 0.67 0.822971
Target:  5'- cGAcCAUGGCC-CGggacuccCUCCCGUGGCUAa -3'
miRNA:   3'- -CUuGUACCGGcGCa------GAGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 42863 0.66 0.847662
Target:  5'- -uACcUGGCCGCGcucCUCgCCGCGcACCu -3'
miRNA:   3'- cuUGuACCGGCGCa--GAG-GGCGU-UGGu -5'
21378 3' -57 NC_004812.1 + 44005 0.69 0.710994
Target:  5'- -cACAUGGCCGaggccagcaGgaggCUCCgGCGGCCGc -3'
miRNA:   3'- cuUGUACCGGCg--------Ca---GAGGgCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 44487 0.67 0.805636
Target:  5'- cGAAgAUGcGCCGCuggaUCUCCUGCucguACCGa -3'
miRNA:   3'- -CUUgUAC-CGGCGc---AGAGGGCGu---UGGU- -5'
21378 3' -57 NC_004812.1 + 45332 0.69 0.720909
Target:  5'- aGGCggGcGCCGUGUCguugCCCGCGcCCAc -3'
miRNA:   3'- cUUGuaC-CGGCGCAGa---GGGCGUuGGU- -5'
21378 3' -57 NC_004812.1 + 45633 0.68 0.75016
Target:  5'- gGGAC--GGCCGCG-CUgCCCGCGGCg- -3'
miRNA:   3'- -CUUGuaCCGGCGCaGA-GGGCGUUGgu -5'
21378 3' -57 NC_004812.1 + 46704 0.67 0.84043
Target:  5'- cGACGUGcaGCCGCucgaacggaaucggCUCCCGCAgaGCCAc -3'
miRNA:   3'- cUUGUAC--CGGCGca------------GAGGGCGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 47422 0.68 0.784933
Target:  5'- cGGACGUGGCUGaagaaccucuccacCGcCUCCCGCc-CCAg -3'
miRNA:   3'- -CUUGUACCGGC--------------GCaGAGGGCGuuGGU- -5'
21378 3' -57 NC_004812.1 + 47468 0.67 0.79673
Target:  5'- ---gGUGaGCCGCGUCaCCCGCcugcuGCCu -3'
miRNA:   3'- cuugUAC-CGGCGCAGaGGGCGu----UGGu -5'
21378 3' -57 NC_004812.1 + 48178 0.69 0.710994
Target:  5'- cGAAgGUGGCCucgGCGUCgagggUCCGC-GCCAc -3'
miRNA:   3'- -CUUgUACCGG---CGCAGa----GGGCGuUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.