miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 14661 0.69 0.730747
Target:  5'- uGAACGgcgccuucgGGCCGUGcCacCCCGCGGCCu -3'
miRNA:   3'- -CUUGUa--------CCGGCGCaGa-GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 15132 0.68 0.73661
Target:  5'- -cGCGUccGGCCGCGUCgccucgggggcucCCCGCAcgACCu -3'
miRNA:   3'- cuUGUA--CCGGCGCAGa------------GGGCGU--UGGu -5'
21378 3' -57 NC_004812.1 + 15927 0.66 0.863163
Target:  5'- -----cGGCCGCgGUCgacCCCGCccuGCCGg -3'
miRNA:   3'- cuuguaCCGGCG-CAGa--GGGCGu--UGGU- -5'
21378 3' -57 NC_004812.1 + 18638 0.66 0.870607
Target:  5'- aGACGcGGCCGCccccGUCUC-CGCAgacgGCCAu -3'
miRNA:   3'- cUUGUaCCGGCG----CAGAGgGCGU----UGGU- -5'
21378 3' -57 NC_004812.1 + 19424 0.73 0.481994
Target:  5'- -cGCGUGGCCGCGcggccgcaggaccgcCUCCCGC-ACCu -3'
miRNA:   3'- cuUGUACCGGCGCa--------------GAGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 19863 0.67 0.839617
Target:  5'- aGAACcgGGUCguugaGCGUCUCCaGCGGCgCGg -3'
miRNA:   3'- -CUUGuaCCGG-----CGCAGAGGgCGUUG-GU- -5'
21378 3' -57 NC_004812.1 + 20555 0.67 0.829715
Target:  5'- -cGCGUGGCCGCGccgcugauggacCUCCCcaGACCGg -3'
miRNA:   3'- cuUGUACCGGCGCa-----------GAGGGcgUUGGU- -5'
21378 3' -57 NC_004812.1 + 21318 0.68 0.786763
Target:  5'- aGAGCGUcccgcaaagacucGGCCGUGUCUCUgGguGCUu -3'
miRNA:   3'- -CUUGUA-------------CCGGCGCAGAGGgCguUGGu -5'
21378 3' -57 NC_004812.1 + 22472 0.67 0.822971
Target:  5'- cAACAgGGCCGUaGUCUUCCcCGACCc -3'
miRNA:   3'- cUUGUaCCGGCG-CAGAGGGcGUUGGu -5'
21378 3' -57 NC_004812.1 + 22915 0.78 0.273089
Target:  5'- gGGGCGUGGCCGCGcC-CCCGC-GCCu -3'
miRNA:   3'- -CUUGUACCGGCGCaGaGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 24528 0.7 0.630027
Target:  5'- -uGCGgucggGGCUGCGUCaccaCCCGCAGCUc -3'
miRNA:   3'- cuUGUa----CCGGCGCAGa---GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 25871 0.67 0.814386
Target:  5'- uGGGguUGGCgGCGgccggccCUCCCGCGGCg- -3'
miRNA:   3'- -CUUguACCGgCGCa------GAGGGCGUUGgu -5'
21378 3' -57 NC_004812.1 + 26269 0.68 0.769161
Target:  5'- gGGACGcGGCCGCG-CgggugcCCCGCGGCg- -3'
miRNA:   3'- -CUUGUaCCGGCGCaGa-----GGGCGUUGgu -5'
21378 3' -57 NC_004812.1 + 27732 0.73 0.500104
Target:  5'- gGGGCGgggGGCCGCGgucagCgggccgCCCGCGGCCc -3'
miRNA:   3'- -CUUGUa--CCGGCGCa----Ga-----GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 28696 0.66 0.847662
Target:  5'- gGGGC-UGGCCGCGcCg-CUGCGGCCc -3'
miRNA:   3'- -CUUGuACCGGCGCaGagGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 29945 0.68 0.787677
Target:  5'- gGAGCGgggGGCCGgG-CUCgCGCcGCCGg -3'
miRNA:   3'- -CUUGUa--CCGGCgCaGAGgGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 30106 0.69 0.730747
Target:  5'- cGGCGUggGGCUGCGgggCgcacgUCCCGCAGCCc -3'
miRNA:   3'- cUUGUA--CCGGCGCa--G-----AGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 30873 0.66 0.854737
Target:  5'- aGAGCggGGCCGCGggggCCggggcugCGCGACCc -3'
miRNA:   3'- -CUUGuaCCGGCGCaga-GG-------GCGUUGGu -5'
21378 3' -57 NC_004812.1 + 31870 0.67 0.839617
Target:  5'- cAGCcgGGgCG-GUCUCCCcCGGCCAg -3'
miRNA:   3'- cUUGuaCCgGCgCAGAGGGcGUUGGU- -5'
21378 3' -57 NC_004812.1 + 31963 0.68 0.769161
Target:  5'- -uGCccGGCCGCGgucucCUCCUGCccGGCCGc -3'
miRNA:   3'- cuUGuaCCGGCGCa----GAGGGCG--UUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.