Results 21 - 40 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21378 | 3' | -57 | NC_004812.1 | + | 27732 | 0.73 | 0.500104 |
Target: 5'- gGGGCGgggGGCCGCGgucagCgggccgCCCGCGGCCc -3' miRNA: 3'- -CUUGUa--CCGGCGCa----Ga-----GGGCGUUGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 113889 | 0.72 | 0.509757 |
Target: 5'- ---uGUGGCCGCGgccaaccgCCCGCGGCCc -3' miRNA: 3'- cuugUACCGGCGCaga-----GGGCGUUGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 76140 | 0.72 | 0.529288 |
Target: 5'- -cGCGccGCCGCGUCg-CCGCGACCAc -3' miRNA: 3'- cuUGUacCGGCGCAGagGGCGUUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 116604 | 0.72 | 0.529288 |
Target: 5'- cGGGCc--GCCGCGUCUgUCGCGGCCGc -3' miRNA: 3'- -CUUGuacCGGCGCAGAgGGCGUUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 138872 | 0.72 | 0.529288 |
Target: 5'- aGGACAUGGCCuaCGUCUCC-GCGgcGCCGc -3' miRNA: 3'- -CUUGUACCGGc-GCAGAGGgCGU--UGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 2211 | 0.72 | 0.539157 |
Target: 5'- cAGCGUGucGCCGCGg--CCCGCGGCCc -3' miRNA: 3'- cUUGUAC--CGGCGCagaGGGCGUUGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 102025 | 0.72 | 0.549088 |
Target: 5'- cGAGgGUGGCuCGUccgccuccGUCUCCCGCGGCg- -3' miRNA: 3'- -CUUgUACCG-GCG--------CAGAGGGCGUUGgu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 145723 | 0.71 | 0.569112 |
Target: 5'- cGACGUGGuCCGCGUCcagcgCCCGCGGg-- -3' miRNA: 3'- cUUGUACC-GGCGCAGa----GGGCGUUggu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 70126 | 0.71 | 0.579194 |
Target: 5'- -cGCGUGGCUGCGg--CCCGCGuucgGCCu -3' miRNA: 3'- cuUGUACCGGCGCagaGGGCGU----UGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 148686 | 0.71 | 0.589312 |
Target: 5'- -----cGGCCGCGcCggcgcgCCCGCAGCCc -3' miRNA: 3'- cuuguaCCGGCGCaGa-----GGGCGUUGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 68409 | 0.71 | 0.589312 |
Target: 5'- --cCggGGCCGCGgCUcgcCCCGCGGCCGa -3' miRNA: 3'- cuuGuaCCGGCGCaGA---GGGCGUUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 97325 | 0.71 | 0.599462 |
Target: 5'- cGGGCggGuGCCGCG-CgCCCGCGACCc -3' miRNA: 3'- -CUUGuaC-CGGCGCaGaGGGCGUUGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 113170 | 0.71 | 0.609636 |
Target: 5'- cGGCGgagGGCCGCGUCgCCCGagaaGAUCGg -3' miRNA: 3'- cUUGUa--CCGGCGCAGaGGGCg---UUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 96734 | 0.71 | 0.609636 |
Target: 5'- aGGGCcgGGCCGCGgC-CCCGCucgucggcgggAACCAg -3' miRNA: 3'- -CUUGuaCCGGCGCaGaGGGCG-----------UUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 42187 | 0.71 | 0.609636 |
Target: 5'- cGAGCG-GGCCcugggcgagGCGUCUCCCGUugacuACCu -3' miRNA: 3'- -CUUGUaCCGG---------CGCAGAGGGCGu----UGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 8207 | 0.71 | 0.619827 |
Target: 5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3' miRNA: 3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 112324 | 0.71 | 0.619827 |
Target: 5'- cGGGCGgcUGGCCGCGgaggCggucgCgCGCGACCAg -3' miRNA: 3'- -CUUGU--ACCGGCGCa---Ga----GgGCGUUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 39108 | 0.71 | 0.619827 |
Target: 5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3' miRNA: 3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 24528 | 0.7 | 0.630027 |
Target: 5'- -uGCGgucggGGCUGCGUCaccaCCCGCAGCUc -3' miRNA: 3'- cuUGUa----CCGGCGCAGa---GGGCGUUGGu -5' |
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21378 | 3' | -57 | NC_004812.1 | + | 73200 | 0.7 | 0.630027 |
Target: 5'- cGGGCggGGCCGggaCGUC-CUCGCGGCCGc -3' miRNA: 3'- -CUUGuaCCGGC---GCAGaGGGCGUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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