miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 144521 1.08 0.002701
Target:  5'- gGAACAUGGCCGCGUCUCCCGCAACCAu -3'
miRNA:   3'- -CUUGUACCGGCGCAGAGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 120901 0.78 0.259853
Target:  5'- -cGCGggGGUCGCGUCUCCCGCAuaaaaggcccggcGCCGc -3'
miRNA:   3'- cuUGUa-CCGGCGCAGAGGGCGU-------------UGGU- -5'
21378 3' -57 NC_004812.1 + 22915 0.78 0.273089
Target:  5'- gGGGCGUGGCCGCGcC-CCCGC-GCCu -3'
miRNA:   3'- -CUUGUACCGGCGCaGaGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 95626 0.77 0.292928
Target:  5'- cAACGUGGCCGuCGUCgucgggUCCCGCA-CCAc -3'
miRNA:   3'- cUUGUACCGGC-GCAG------AGGGCGUuGGU- -5'
21378 3' -57 NC_004812.1 + 41836 0.77 0.306768
Target:  5'- -uGCAUGGCCGCGgcggUCCC-CAACCAa -3'
miRNA:   3'- cuUGUACCGGCGCag--AGGGcGUUGGU- -5'
21378 3' -57 NC_004812.1 + 127720 0.76 0.351259
Target:  5'- cAGCGUGucGCCGCGg--CCCGCGGCCAg -3'
miRNA:   3'- cUUGUAC--CGGCGCagaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136930 0.75 0.38337
Target:  5'- cGACcgGGCCGCccucGUC-CCCGCGGCCc -3'
miRNA:   3'- cUUGuaCCGGCG----CAGaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 142021 0.74 0.407839
Target:  5'- gGGACGUGGCCGCG-CUggagacgCCCGCgGGCCu -3'
miRNA:   3'- -CUUGUACCGGCGCaGA-------GGGCG-UUGGu -5'
21378 3' -57 NC_004812.1 + 78425 0.74 0.417373
Target:  5'- cGACGUGGCgGCGcacCUCCCGCucauCCAg -3'
miRNA:   3'- cUUGUACCGgCGCa--GAGGGCGuu--GGU- -5'
21378 3' -57 NC_004812.1 + 105725 0.74 0.426156
Target:  5'- cGAACAccggGGCCGgGggguggCCCGCGACCAg -3'
miRNA:   3'- -CUUGUa---CCGGCgCaga---GGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 40101 0.74 0.426156
Target:  5'- cGGCcgGGCgCGCGUCcgUCCGCGACCc -3'
miRNA:   3'- cUUGuaCCG-GCGCAGa-GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 14575 0.74 0.435049
Target:  5'- gGGGCA-GGCCcgcggGCGUCUCCagCGCGGCCAc -3'
miRNA:   3'- -CUUGUaCCGG-----CGCAGAGG--GCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 137550 0.74 0.444048
Target:  5'- cGGGCcugGGCCGCgGUCUCggccgCCGCGGCCGa -3'
miRNA:   3'- -CUUGua-CCGGCG-CAGAG-----GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 36204 0.74 0.453151
Target:  5'- uGAGCGcGGCCGCGUCgccCUCGCggUCGc -3'
miRNA:   3'- -CUUGUaCCGGCGCAGa--GGGCGuuGGU- -5'
21378 3' -57 NC_004812.1 + 36917 0.73 0.462354
Target:  5'- gGGACGguGCCGCcagCUCCCGCAGCCc -3'
miRNA:   3'- -CUUGUacCGGCGca-GAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 108432 0.73 0.471655
Target:  5'- -uGCAgGGCCGCGuUCUCcagcgCCGCGGCCGc -3'
miRNA:   3'- cuUGUaCCGGCGC-AGAG-----GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 111634 0.73 0.471655
Target:  5'- --uCGUGGCCGCGggcCUCCUGCGcGCCc -3'
miRNA:   3'- cuuGUACCGGCGCa--GAGGGCGU-UGGu -5'
21378 3' -57 NC_004812.1 + 19424 0.73 0.481994
Target:  5'- -cGCGUGGCCGCGcggccgcaggaccgcCUCCCGC-ACCu -3'
miRNA:   3'- cuUGUACCGGCGCa--------------GAGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 154940 0.73 0.490534
Target:  5'- cGGGCG-GGCCGCGg--CgCCGCGGCCAa -3'
miRNA:   3'- -CUUGUaCCGGCGCagaG-GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 124039 0.73 0.490534
Target:  5'- cGGGCG-GGCCGCGg--CgCCGCGGCCAa -3'
miRNA:   3'- -CUUGUaCCGGCGCagaG-GGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.