miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 144 0.69 0.701014
Target:  5'- -cGCGUGgcGCCGCGcCgccgcgCCCGCGGCCc -3'
miRNA:   3'- cuUGUAC--CGGCGCaGa-----GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 847 0.66 0.855513
Target:  5'- aGGGCcccGCgCGUGUC-CCCGCGGCCGc -3'
miRNA:   3'- -CUUGuacCG-GCGCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 1012 0.66 0.877838
Target:  5'- cGGCcggGGCCGCGcC-CCCGCGaggGCCc -3'
miRNA:   3'- cUUGua-CCGGCGCaGaGGGCGU---UGGu -5'
21378 3' -57 NC_004812.1 + 1062 0.68 0.769161
Target:  5'- -uGCccGGCCGCGgucucCUCCUGCccGGCCGc -3'
miRNA:   3'- cuUGuaCCGGCGCa----GAGGGCG--UUGGU- -5'
21378 3' -57 NC_004812.1 + 1669 0.66 0.847662
Target:  5'- ----uUGGCCGCGg--CgCCGCGGCCc -3'
miRNA:   3'- cuuguACCGGCGCagaG-GGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 2211 0.72 0.539157
Target:  5'- cAGCGUGucGCCGCGg--CCCGCGGCCc -3'
miRNA:   3'- cUUGUAC--CGGCGCagaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 2807 0.67 0.839617
Target:  5'- aGACGUGGCgGCGcgCgacggcgggCCCGuCGGCCGg -3'
miRNA:   3'- cUUGUACCGgCGCa-Ga--------GGGC-GUUGGU- -5'
21378 3' -57 NC_004812.1 + 3019 0.68 0.75016
Target:  5'- -----cGGCCGUGUCgggCCCGCAGaggcgguugcCCAg -3'
miRNA:   3'- cuuguaCCGGCGCAGa--GGGCGUU----------GGU- -5'
21378 3' -57 NC_004812.1 + 3491 0.69 0.710994
Target:  5'- -cGCGgcgGGCCGCGggcgCgggCCCGgGGCCGg -3'
miRNA:   3'- cuUGUa--CCGGCGCa---Ga--GGGCgUUGGU- -5'
21378 3' -57 NC_004812.1 + 4440 0.69 0.705013
Target:  5'- --cCcgGGCCGCGUgUCCCcgcccgaguaccccgGCGACCc -3'
miRNA:   3'- cuuGuaCCGGCGCAgAGGG---------------CGUUGGu -5'
21378 3' -57 NC_004812.1 + 5144 0.68 0.759717
Target:  5'- gGGAC--GGCgGCGUCggCCCGCGGuCCGg -3'
miRNA:   3'- -CUUGuaCCGgCGCAGa-GGGCGUU-GGU- -5'
21378 3' -57 NC_004812.1 + 5608 0.67 0.831384
Target:  5'- -uGCGaGGCCGCGUCguaguagaaCCGgGGCCGc -3'
miRNA:   3'- cuUGUaCCGGCGCAGag-------GGCgUUGGU- -5'
21378 3' -57 NC_004812.1 + 7043 0.68 0.787677
Target:  5'- gGGACGcgaggGGCgGCGUCcCCCGUcGCCu -3'
miRNA:   3'- -CUUGUa----CCGgCGCAGaGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 7990 0.66 0.863163
Target:  5'- cGGGCGccGGUCagggggGCG-CUCCCGCGACCc -3'
miRNA:   3'- -CUUGUa-CCGG------CGCaGAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 8207 0.71 0.619827
Target:  5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3'
miRNA:   3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 9381 0.66 0.877838
Target:  5'- uGAACuucGUGGCCGCG-CUggcgcCCCGCcuacaGACCc -3'
miRNA:   3'- -CUUG---UACCGGCGCaGA-----GGGCG-----UUGGu -5'
21378 3' -57 NC_004812.1 + 12426 0.68 0.778484
Target:  5'- --cCAUGGCCag--CUCCCGCGACUc -3'
miRNA:   3'- cuuGUACCGGcgcaGAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 12969 0.68 0.788588
Target:  5'- cGAACGgcgcuccgcgcccggGGCCGCGcucgcgCUCUCGCcGCCGc -3'
miRNA:   3'- -CUUGUa--------------CCGGCGCa-----GAGGGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 14015 0.7 0.640228
Target:  5'- uGAuCGUcGGaCCGCGaaugaccaCUCCCGCGACCAg -3'
miRNA:   3'- -CUuGUA-CC-GGCGCa-------GAGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 14575 0.74 0.435049
Target:  5'- gGGGCA-GGCCcgcggGCGUCUCCagCGCGGCCAc -3'
miRNA:   3'- -CUUGUaCCGG-----CGCAGAGG--GCGUUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.