miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 85567 0.7 0.640228
Target:  5'- aGGACAUGGCCGC----CCCGCcACCc -3'
miRNA:   3'- -CUUGUACCGGCGcagaGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 70126 0.71 0.579194
Target:  5'- -cGCGUGGCUGCGg--CCCGCGuucgGCCu -3'
miRNA:   3'- cuUGUACCGGCGCagaGGGCGU----UGGu -5'
21378 3' -57 NC_004812.1 + 68409 0.71 0.589312
Target:  5'- --cCggGGCCGCGgCUcgcCCCGCGGCCGa -3'
miRNA:   3'- cuuGuaCCGGCGCaGA---GGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 97325 0.71 0.599462
Target:  5'- cGGGCggGuGCCGCG-CgCCCGCGACCc -3'
miRNA:   3'- -CUUGuaC-CGGCGCaGaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 42187 0.71 0.609636
Target:  5'- cGAGCG-GGCCcugggcgagGCGUCUCCCGUugacuACCu -3'
miRNA:   3'- -CUUGUaCCGG---------CGCAGAGGGCGu----UGGu -5'
21378 3' -57 NC_004812.1 + 113170 0.71 0.609636
Target:  5'- cGGCGgagGGCCGCGUCgCCCGagaaGAUCGg -3'
miRNA:   3'- cUUGUa--CCGGCGCAGaGGGCg---UUGGU- -5'
21378 3' -57 NC_004812.1 + 8207 0.71 0.619827
Target:  5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3'
miRNA:   3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 24528 0.7 0.630027
Target:  5'- -uGCGgucggGGCUGCGUCaccaCCCGCAGCUc -3'
miRNA:   3'- cuUGUa----CCGGCGCAGa---GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 73200 0.7 0.630027
Target:  5'- cGGGCggGGCCGggaCGUC-CUCGCGGCCGc -3'
miRNA:   3'- -CUUGuaCCGGC---GCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 102025 0.72 0.549088
Target:  5'- cGAGgGUGGCuCGUccgccuccGUCUCCCGCGGCg- -3'
miRNA:   3'- -CUUgUACCG-GCG--------CAGAGGGCGUUGgu -5'
21378 3' -57 NC_004812.1 + 76140 0.72 0.529288
Target:  5'- -cGCGccGCCGCGUCg-CCGCGACCAc -3'
miRNA:   3'- cuUGUacCGGCGCAGagGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 138872 0.72 0.529288
Target:  5'- aGGACAUGGCCuaCGUCUCC-GCGgcGCCGc -3'
miRNA:   3'- -CUUGUACCGGc-GCAGAGGgCGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 127720 0.76 0.351259
Target:  5'- cAGCGUGucGCCGCGg--CCCGCGGCCAg -3'
miRNA:   3'- cUUGUAC--CGGCGCagaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136930 0.75 0.38337
Target:  5'- cGACcgGGCCGCccucGUC-CCCGCGGCCc -3'
miRNA:   3'- cUUGuaCCGGCG----CAGaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 14575 0.74 0.435049
Target:  5'- gGGGCA-GGCCcgcggGCGUCUCCagCGCGGCCAc -3'
miRNA:   3'- -CUUGUaCCGG-----CGCAGAGG--GCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 36204 0.74 0.453151
Target:  5'- uGAGCGcGGCCGCGUCgccCUCGCggUCGc -3'
miRNA:   3'- -CUUGUaCCGGCGCAGa--GGGCGuuGGU- -5'
21378 3' -57 NC_004812.1 + 36917 0.73 0.462354
Target:  5'- gGGACGguGCCGCcagCUCCCGCAGCCc -3'
miRNA:   3'- -CUUGUacCGGCGca-GAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 19424 0.73 0.481994
Target:  5'- -cGCGUGGCCGCGcggccgcaggaccgcCUCCCGC-ACCu -3'
miRNA:   3'- cuUGUACCGGCGCa--------------GAGGGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 124039 0.73 0.490534
Target:  5'- cGGGCG-GGCCGCGg--CgCCGCGGCCAa -3'
miRNA:   3'- -CUUGUaCCGGCGCagaG-GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 27732 0.73 0.500104
Target:  5'- gGGGCGgggGGCCGCGgucagCgggccgCCCGCGGCCc -3'
miRNA:   3'- -CUUGUa--CCGGCGCa----Ga-----GGGCGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.