miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 156381 0.66 0.854737
Target:  5'- aGAGCggGGCCGCGggggCCggggcugCGCGACCc -3'
miRNA:   3'- -CUUGuaCCGGCGCaga-GG-------GCGUUGGu -5'
21378 3' -57 NC_004812.1 + 94758 0.66 0.870607
Target:  5'- cGGCGcUGGCCGCcgaGUUcgCCCGCGuCCAc -3'
miRNA:   3'- cUUGU-ACCGGCG---CAGa-GGGCGUuGGU- -5'
21378 3' -57 NC_004812.1 + 9381 0.66 0.877838
Target:  5'- uGAACuucGUGGCCGCG-CUggcgcCCCGCcuacaGACCc -3'
miRNA:   3'- -CUUG---UACCGGCGCaGA-----GGGCG-----UUGGu -5'
21378 3' -57 NC_004812.1 + 96121 0.66 0.855513
Target:  5'- -uGCGUGGCCGCcaacuaCUaCCCggGCGACCGc -3'
miRNA:   3'- cuUGUACCGGCGca----GA-GGG--CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136193 0.66 0.855513
Target:  5'- gGGGCAgGGCCGCGUgucgaUCCaGCAGCg- -3'
miRNA:   3'- -CUUGUaCCGGCGCAg----AGGgCGUUGgu -5'
21378 3' -57 NC_004812.1 + 113047 0.66 0.847662
Target:  5'- cGGACGgccgcGGCCgGCGUCggCCGCGGCg- -3'
miRNA:   3'- -CUUGUa----CCGG-CGCAGagGGCGUUGgu -5'
21378 3' -57 NC_004812.1 + 1669 0.66 0.847662
Target:  5'- ----uUGGCCGCGg--CgCCGCGGCCc -3'
miRNA:   3'- cuuguACCGGCGCagaG-GGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 70002 0.66 0.863163
Target:  5'- uGGGCAaccGcGCCGCGg--CCCGCAACUu -3'
miRNA:   3'- -CUUGUa--C-CGGCGCagaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 15927 0.66 0.863163
Target:  5'- -----cGGCCGCgGUCgacCCCGCccuGCCGg -3'
miRNA:   3'- cuuguaCCGGCG-CAGa--GGGCGu--UGGU- -5'
21378 3' -57 NC_004812.1 + 57062 0.66 0.863163
Target:  5'- -uGCcgGGCCGCGgucggCUCcgacaCCGCGucGCCGu -3'
miRNA:   3'- cuUGuaCCGGCGCa----GAG-----GGCGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 18638 0.66 0.870607
Target:  5'- aGACGcGGCCGCccccGUCUC-CGCAgacgGCCAu -3'
miRNA:   3'- cUUGUaCCGGCG----CAGAGgGCGU----UGGU- -5'
21378 3' -57 NC_004812.1 + 7990 0.66 0.863163
Target:  5'- cGGGCGccGGUCagggggGCG-CUCCCGCGACCc -3'
miRNA:   3'- -CUUGUa-CCGG------CGCaGAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 154204 0.66 0.847662
Target:  5'- gGGGC-UGGCCGCGcCg-CUGCGGCCc -3'
miRNA:   3'- -CUUGuACCGGCGCaGagGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 77141 0.66 0.855513
Target:  5'- cGGCcagGcGCCGCGUCUcggCCgGCAGCCc -3'
miRNA:   3'- cUUGua-C-CGGCGCAGA---GGgCGUUGGu -5'
21378 3' -57 NC_004812.1 + 67501 0.66 0.863163
Target:  5'- -cGCG-GGCCGuCGUCUCgCGC-GCCu -3'
miRNA:   3'- cuUGUaCCGGC-GCAGAGgGCGuUGGu -5'
21378 3' -57 NC_004812.1 + 126355 0.66 0.855513
Target:  5'- aGGGCcccGCgCGUGUC-CCCGCGGCCGc -3'
miRNA:   3'- -CUUGuacCG-GCGCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136013 0.66 0.870607
Target:  5'- -cGCA-GGCgCGCGUC-CUCGCcACCGg -3'
miRNA:   3'- cuUGUaCCG-GCGCAGaGGGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 104515 0.66 0.855513
Target:  5'- gGGACG-GGCgGuCGUCgcgcgCCCGCGaacGCCAa -3'
miRNA:   3'- -CUUGUaCCGgC-GCAGa----GGGCGU---UGGU- -5'
21378 3' -57 NC_004812.1 + 58373 0.66 0.863163
Target:  5'- --cCAgGGCCGCGcCgcCCCGCGgagACCAg -3'
miRNA:   3'- cuuGUaCCGGCGCaGa-GGGCGU---UGGU- -5'
21378 3' -57 NC_004812.1 + 42863 0.66 0.847662
Target:  5'- -uACcUGGCCGCGcucCUCgCCGCGcACCu -3'
miRNA:   3'- cuUGuACCGGCGCa--GAG-GGCGU-UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.