miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 118811 0.66 0.855513
Target:  5'- -uGCAUGGCCGUGUa--UCGgGACCu -3'
miRNA:   3'- cuUGUACCGGCGCAgagGGCgUUGGu -5'
21378 3' -57 NC_004812.1 + 847 0.66 0.855513
Target:  5'- aGGGCcccGCgCGUGUC-CCCGCGGCCGc -3'
miRNA:   3'- -CUUGuacCG-GCGCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 98582 0.66 0.875691
Target:  5'- cAGCAcgagGGgCGCGUCcgucaggucgucgcUCCCGUGGCCGu -3'
miRNA:   3'- cUUGUa---CCgGCGCAG--------------AGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136013 0.66 0.870607
Target:  5'- -cGCA-GGCgCGCGUC-CUCGCcACCGg -3'
miRNA:   3'- cuUGUaCCG-GCGCAGaGGGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 94758 0.66 0.870607
Target:  5'- cGGCGcUGGCCGCcgaGUUcgCCCGCGuCCAc -3'
miRNA:   3'- cUUGU-ACCGGCG---CAGa-GGGCGUuGGU- -5'
21378 3' -57 NC_004812.1 + 40410 0.66 0.870607
Target:  5'- cGAGCcaGGCCGCGUaguagCCCGCcACg- -3'
miRNA:   3'- -CUUGuaCCGGCGCAga---GGGCGuUGgu -5'
21378 3' -57 NC_004812.1 + 126355 0.66 0.855513
Target:  5'- aGGGCcccGCgCGUGUC-CCCGCGGCCGc -3'
miRNA:   3'- -CUUGuacCG-GCGCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136193 0.66 0.855513
Target:  5'- gGGGCAgGGCCGCGUgucgaUCCaGCAGCg- -3'
miRNA:   3'- -CUUGUaCCGGCGCAg----AGGgCGUUGgu -5'
21378 3' -57 NC_004812.1 + 58373 0.66 0.863163
Target:  5'- --cCAgGGCCGCGcCgcCCCGCGgagACCAg -3'
miRNA:   3'- cuuGUaCCGGCGCaGa-GGGCGU---UGGU- -5'
21378 3' -57 NC_004812.1 + 18638 0.66 0.870607
Target:  5'- aGACGcGGCCGCccccGUCUC-CGCAgacgGCCAu -3'
miRNA:   3'- cUUGUaCCGGCG----CAGAGgGCGU----UGGU- -5'
21378 3' -57 NC_004812.1 + 96121 0.66 0.855513
Target:  5'- -uGCGUGGCCGCcaacuaCUaCCCggGCGACCGc -3'
miRNA:   3'- cuUGUACCGGCGca----GA-GGG--CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 128646 0.66 0.855513
Target:  5'- cGGGCuUGGCuCGCGUCccacauccggUCCgGUGGCCGg -3'
miRNA:   3'- -CUUGuACCG-GCGCAG----------AGGgCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 102003 0.66 0.855513
Target:  5'- -----cGGCCccgccCGUC-CCCGCGGCCAc -3'
miRNA:   3'- cuuguaCCGGc----GCAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 126360 0.66 0.870607
Target:  5'- gGGGCGUGGUgGCacUUCCCcaGCGGCCAg -3'
miRNA:   3'- -CUUGUACCGgCGcaGAGGG--CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 59668 0.66 0.877838
Target:  5'- aGGCGU-GCCGCGUCUCCagguCGCAGa-- -3'
miRNA:   3'- cUUGUAcCGGCGCAGAGG----GCGUUggu -5'
21378 3' -57 NC_004812.1 + 101133 0.66 0.847662
Target:  5'- cGAACGgcuucgcGGCgCGCGUgcgCUUCUGCGACCu -3'
miRNA:   3'- -CUUGUa------CCG-GCGCA---GAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 30873 0.66 0.854737
Target:  5'- aGAGCggGGCCGCGggggCCggggcugCGCGACCc -3'
miRNA:   3'- -CUUGuaCCGGCGCaga-GG-------GCGUUGGu -5'
21378 3' -57 NC_004812.1 + 128111 0.66 0.855513
Target:  5'- ---gGUGGCCGCGgagcccccuuUCcccgCCCGCcGCCGg -3'
miRNA:   3'- cuugUACCGGCGC----------AGa---GGGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 69040 0.66 0.870607
Target:  5'- cAGCAUGGCgGgCGUCgagggcacgaUCUCGUGGCCGu -3'
miRNA:   3'- cUUGUACCGgC-GCAG----------AGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 88415 0.66 0.852397
Target:  5'- -cGCGcGGCCggGCGUCcggcgcgcccccgCCCGCGGCCGc -3'
miRNA:   3'- cuUGUaCCGG--CGCAGa------------GGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.