miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 144521 1.08 0.002701
Target:  5'- gGAACAUGGCCGCGUCUCCCGCAACCAu -3'
miRNA:   3'- -CUUGUACCGGCGCAGAGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 96734 0.71 0.609636
Target:  5'- aGGGCcgGGCCGCGgC-CCCGCucgucggcgggAACCAg -3'
miRNA:   3'- -CUUGuaCCGGCGCaGaGGGCG-----------UUGGU- -5'
21378 3' -57 NC_004812.1 + 39108 0.71 0.619827
Target:  5'- aGAGCGgccgggGGcCCGCGUCggacgcgCCCgGCGGCCGg -3'
miRNA:   3'- -CUUGUa-----CC-GGCGCAGa------GGG-CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 9381 0.66 0.877838
Target:  5'- uGAACuucGUGGCCGCG-CUggcgcCCCGCcuacaGACCc -3'
miRNA:   3'- -CUUG---UACCGGCGCaGA-----GGGCG-----UUGGu -5'
21378 3' -57 NC_004812.1 + 142021 0.74 0.407839
Target:  5'- gGGACGUGGCCGCG-CUggagacgCCCGCgGGCCu -3'
miRNA:   3'- -CUUGUACCGGCGCaGA-------GGGCG-UUGGu -5'
21378 3' -57 NC_004812.1 + 78425 0.74 0.417373
Target:  5'- cGACGUGGCgGCGcacCUCCCGCucauCCAg -3'
miRNA:   3'- cUUGUACCGgCGCa--GAGGGCGuu--GGU- -5'
21378 3' -57 NC_004812.1 + 40101 0.74 0.426156
Target:  5'- cGGCcgGGCgCGCGUCcgUCCGCGACCc -3'
miRNA:   3'- cUUGuaCCG-GCGCAGa-GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 137550 0.74 0.444048
Target:  5'- cGGGCcugGGCCGCgGUCUCggccgCCGCGGCCGa -3'
miRNA:   3'- -CUUGua-CCGGCG-CAGAG-----GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 154940 0.73 0.490534
Target:  5'- cGGGCG-GGCCGCGg--CgCCGCGGCCAa -3'
miRNA:   3'- -CUUGUaCCGGCGCagaG-GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 148686 0.71 0.589312
Target:  5'- -----cGGCCGCGcCggcgcgCCCGCAGCCc -3'
miRNA:   3'- cuuguaCCGGCGCaGa-----GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 116604 0.72 0.529288
Target:  5'- cGGGCc--GCCGCGUCUgUCGCGGCCGc -3'
miRNA:   3'- -CUUGuacCGGCGCAGAgGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 111634 0.73 0.471655
Target:  5'- --uCGUGGCCGCGggcCUCCUGCGcGCCc -3'
miRNA:   3'- cuuGUACCGGCGCa--GAGGGCGU-UGGu -5'
21378 3' -57 NC_004812.1 + 120901 0.78 0.259853
Target:  5'- -cGCGggGGUCGCGUCUCCCGCAuaaaaggcccggcGCCGc -3'
miRNA:   3'- cuUGUa-CCGGCGCAGAGGGCGU-------------UGGU- -5'
21378 3' -57 NC_004812.1 + 2211 0.72 0.539157
Target:  5'- cAGCGUGucGCCGCGg--CCCGCGGCCc -3'
miRNA:   3'- cUUGUAC--CGGCGCagaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 95626 0.77 0.292928
Target:  5'- cAACGUGGCCGuCGUCgucgggUCCCGCA-CCAc -3'
miRNA:   3'- cUUGUACCGGC-GCAG------AGGGCGUuGGU- -5'
21378 3' -57 NC_004812.1 + 108432 0.73 0.471655
Target:  5'- -uGCAgGGCCGCGuUCUCcagcgCCGCGGCCGc -3'
miRNA:   3'- cuUGUaCCGGCGC-AGAG-----GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 145723 0.71 0.569112
Target:  5'- cGACGUGGuCCGCGUCcagcgCCCGCGGg-- -3'
miRNA:   3'- cUUGUACC-GGCGCAGa----GGGCGUUggu -5'
21378 3' -57 NC_004812.1 + 112324 0.71 0.619827
Target:  5'- cGGGCGgcUGGCCGCGgaggCggucgCgCGCGACCAg -3'
miRNA:   3'- -CUUGU--ACCGGCGCa---Ga----GgGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 41836 0.77 0.306768
Target:  5'- -uGCAUGGCCGCGgcggUCCC-CAACCAa -3'
miRNA:   3'- cuUGUACCGGCGCag--AGGGcGUUGGU- -5'
21378 3' -57 NC_004812.1 + 105725 0.74 0.426156
Target:  5'- cGAACAccggGGCCGgGggguggCCCGCGACCAg -3'
miRNA:   3'- -CUUGUa---CCGGCgCaga---GGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.