miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 156554 0.69 0.701014
Target:  5'- -cGCGUGgcGCCGCGcCgccgcgCCCGCGGCCc -3'
miRNA:   3'- cuUGUAC--CGGCGCaGa-----GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 156381 0.66 0.854737
Target:  5'- aGAGCggGGCCGCGggggCCggggcugCGCGACCc -3'
miRNA:   3'- -CUUGuaCCGGCGCaga-GG-------GCGUUGGu -5'
21378 3' -57 NC_004812.1 + 156029 0.67 0.814386
Target:  5'- -uACcgGaGCCGCGcccgcggCUCCaCGCGGCCGc -3'
miRNA:   3'- cuUGuaC-CGGCGCa------GAGG-GCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 155821 0.67 0.831384
Target:  5'- cGGCGggGGCgGCGgcccaUCUCCCGCGggGCCc -3'
miRNA:   3'- cUUGUa-CCGgCGC-----AGAGGGCGU--UGGu -5'
21378 3' -57 NC_004812.1 + 155454 0.68 0.787677
Target:  5'- gGAGCGgggGGCCGgG-CUCgCGCcGCCGg -3'
miRNA:   3'- -CUUGUa--CCGGCgCaGAGgGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 154940 0.73 0.490534
Target:  5'- cGGGCG-GGCCGCGg--CgCCGCGGCCAa -3'
miRNA:   3'- -CUUGUaCCGGCGCagaG-GGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 154204 0.66 0.847662
Target:  5'- gGGGC-UGGCCGCGcCg-CUGCGGCCc -3'
miRNA:   3'- -CUUGuACCGGCGCaGagGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 153334 0.67 0.805636
Target:  5'- uGGGCccgGGCgGCGUCUCCUcggGCGGCgGg -3'
miRNA:   3'- -CUUGua-CCGgCGCAGAGGG---CGUUGgU- -5'
21378 3' -57 NC_004812.1 + 151753 0.67 0.805636
Target:  5'- -cGCGcgGGCCGCGgcccCUCCC-CGGCCc -3'
miRNA:   3'- cuUGUa-CCGGCGCa---GAGGGcGUUGGu -5'
21378 3' -57 NC_004812.1 + 150799 0.68 0.7405
Target:  5'- aGAGCcc-GCCGCG-C-CCCGCAGCCc -3'
miRNA:   3'- -CUUGuacCGGCGCaGaGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 148989 0.67 0.805636
Target:  5'- -----cGGCCgccgcGCGUCUCCggCGCGACCu -3'
miRNA:   3'- cuuguaCCGG-----CGCAGAGG--GCGUUGGu -5'
21378 3' -57 NC_004812.1 + 148808 0.68 0.769161
Target:  5'- aGACA-GGUagGCuUCUCCCGCGGCCu -3'
miRNA:   3'- cUUGUaCCGg-CGcAGAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 148686 0.71 0.589312
Target:  5'- -----cGGCCGCGcCggcgcgCCCGCAGCCc -3'
miRNA:   3'- cuuguaCCGGCGCaGa-----GGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 147237 0.66 0.877838
Target:  5'- aGGGCGUGGCCGagGUCUucgaggaaaCCgGCGGCgAa -3'
miRNA:   3'- -CUUGUACCGGCg-CAGA---------GGgCGUUGgU- -5'
21378 3' -57 NC_004812.1 + 145723 0.71 0.569112
Target:  5'- cGACGUGGuCCGCGUCcagcgCCCGCGGg-- -3'
miRNA:   3'- cUUGUACC-GGCGCAGa----GGGCGUUggu -5'
21378 3' -57 NC_004812.1 + 144521 1.08 0.002701
Target:  5'- gGAACAUGGCCGCGUCUCCCGCAACCAu -3'
miRNA:   3'- -CUUGUACCGGCGCAGAGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 142021 0.74 0.407839
Target:  5'- gGGACGUGGCCGCG-CUggagacgCCCGCgGGCCu -3'
miRNA:   3'- -CUUGUACCGGCGCaGA-------GGGCG-UUGGu -5'
21378 3' -57 NC_004812.1 + 139748 0.7 0.630027
Target:  5'- cGAcCA-GGUCGCgGUCcCCCGCGACCGc -3'
miRNA:   3'- -CUuGUaCCGGCG-CAGaGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 138872 0.72 0.529288
Target:  5'- aGGACAUGGCCuaCGUCUCC-GCGgcGCCGc -3'
miRNA:   3'- -CUUGUACCGGc-GCAGAGGgCGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 138147 0.68 0.769161
Target:  5'- cGGGCGcggGGCCGCGcCccCCCGCcgcGCCAc -3'
miRNA:   3'- -CUUGUa--CCGGCGCaGa-GGGCGu--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.