Results 21 - 40 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21378 | 5' | -58.4 | NC_004812.1 | + | 38853 | 0.72 | 0.484463 |
Target: 5'- uGGUCcuccugcaugUCCAgcaggUGGCG-CGCGACGUCGUCg -3' miRNA: 3'- -UCAG----------AGGU-----GCCGUgGCGCUGCAGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 104846 | 0.72 | 0.484463 |
Target: 5'- cGGUCUggcucuuggCCGCgccGGCgGCCGCGGCgGUCGUCg -3' miRNA: 3'- -UCAGA---------GGUG---CCG-UGGCGCUG-CAGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 90793 | 0.72 | 0.484463 |
Target: 5'- gGGUUcggggagccagUCCACGGCcUgGCGGCGUCGUg -3' miRNA: 3'- -UCAG-----------AGGUGCCGuGgCGCUGCAGCAg -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 154944 | 0.72 | 0.493767 |
Target: 5'- cGGg--CCGCGGCGCCGCGgccaacgggggaGCGgcgCGUCa -3' miRNA: 3'- -UCagaGGUGCCGUGGCGC------------UGCa--GCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 11385 | 0.72 | 0.493767 |
Target: 5'- gGGgaucgCUCCAccaccgcguucCGGUACCGCGACGcCGUg -3' miRNA: 3'- -UCa----GAGGU-----------GCCGUGGCGCUGCaGCAg -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 124043 | 0.72 | 0.493767 |
Target: 5'- cGGg--CCGCGGCGCCGCGgccaacgggggaGCGgcgCGUCa -3' miRNA: 3'- -UCagaGGUGCCGUGGCGC------------UGCa--GCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 59999 | 0.72 | 0.50221 |
Target: 5'- aGGUCcuucgggUCCGCGGgGCCG--GCGUCGUCg -3' miRNA: 3'- -UCAG-------AGGUGCCgUGGCgcUGCAGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 73836 | 0.72 | 0.512614 |
Target: 5'- cGUC-CCAgCGGCACCcgacucgcGCGucaGCGUCGUCg -3' miRNA: 3'- uCAGaGGU-GCCGUGG--------CGC---UGCAGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 114959 | 0.71 | 0.531751 |
Target: 5'- ---gUCCGCGGCGuuGgCGACGUCGg- -3' miRNA: 3'- ucagAGGUGCCGUggC-GCUGCAGCag -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 67332 | 0.71 | 0.531751 |
Target: 5'- gGGgCUCCGCGccGCGCCGCGGCcugcgCGUCc -3' miRNA: 3'- -UCaGAGGUGC--CGUGGCGCUGca---GCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 100823 | 0.71 | 0.531751 |
Target: 5'- cGUCUCggggGCgGGCGCCGCGACGcCGg- -3' miRNA: 3'- uCAGAGg---UG-CCGUGGCGCUGCaGCag -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 124791 | 0.71 | 0.540447 |
Target: 5'- uGGUC-CCGCGGCACCacuacgccaccaaGgGGCGguUCGUCg -3' miRNA: 3'- -UCAGaGGUGCCGUGG-------------CgCUGC--AGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 72204 | 0.71 | 0.550165 |
Target: 5'- gGGUCgucgcggggcgUCCGCGGCcucgcggACUGCGGCGgggCGUCc -3' miRNA: 3'- -UCAG-----------AGGUGCCG-------UGGCGCUGCa--GCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 123393 | 0.71 | 0.550165 |
Target: 5'- uGGUCUgCACGGCGUCGgGGCGgaugaaguuggccUCGUCg -3' miRNA: 3'- -UCAGAgGUGCCGUGGCgCUGC-------------AGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 21800 | 0.71 | 0.551139 |
Target: 5'- -uUCgCCGCGGUACC-CGACGgCGUCa -3' miRNA: 3'- ucAGaGGUGCCGUGGcGCUGCaGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 130856 | 0.71 | 0.551139 |
Target: 5'- gGGUCggCgGgGGCGCgGCGGCGUCGa- -3' miRNA: 3'- -UCAGa-GgUgCCGUGgCGCUGCAGCag -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 5348 | 0.71 | 0.551139 |
Target: 5'- gGGUCggCgGgGGCGCgGCGGCGUCGa- -3' miRNA: 3'- -UCAGa-GgUgCCGUGgCGCUGCAGCag -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 56430 | 0.71 | 0.551139 |
Target: 5'- cGGUCcgCCA-GGCGCCG-GGCGaUCGUCg -3' miRNA: 3'- -UCAGa-GGUgCCGUGGCgCUGC-AGCAG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 43623 | 0.71 | 0.555044 |
Target: 5'- -cUCggcggCCGCGGCGCCGCGAuccaucgccgccggaCGUCGcCu -3' miRNA: 3'- ucAGa----GGUGCCGUGGCGCU---------------GCAGCaG- -5' |
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21378 | 5' | -58.4 | NC_004812.1 | + | 102141 | 0.71 | 0.570738 |
Target: 5'- uGUCguagUCCAUGGCcuCCGCGucggcccCGUCGUCg -3' miRNA: 3'- uCAG----AGGUGCCGu-GGCGCu------GCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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