miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 106279 0.66 0.835861
Target:  5'- cGGUCUUaucgacucCGGCuACCGCGGaaccauccaggcCGUCGUCc -3'
miRNA:   3'- -UCAGAGgu------GCCG-UGGCGCU------------GCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 88494 0.66 0.835861
Target:  5'- cGUCgCCGCGGcCGCCGaGACGUuCGcCc -3'
miRNA:   3'- uCAGaGGUGCC-GUGGCgCUGCA-GCaG- -5'
21378 5' -58.4 NC_004812.1 + 130673 0.66 0.835056
Target:  5'- cGGUCUCgGCgGGCACCucguccggcucucGCGACG-CG-Cg -3'
miRNA:   3'- -UCAGAGgUG-CCGUGG-------------CGCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 43541 0.66 0.831004
Target:  5'- uGUCgcggcucgcugccgCCGCGGCcgacgccgGCCGCGGcCGUcCGUCc -3'
miRNA:   3'- uCAGa-------------GGUGCCG--------UGGCGCU-GCA-GCAG- -5'
21378 5' -58.4 NC_004812.1 + 135618 0.66 0.827731
Target:  5'- -----gCGCGGCGgCGaCGACGUCGUUc -3'
miRNA:   3'- ucagagGUGCCGUgGC-GCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 20016 0.66 0.827731
Target:  5'- cGUCUCCGCGcGCGUCGCGGCa----- -3'
miRNA:   3'- uCAGAGGUGC-CGUGGCGCUGcagcag -5'
21378 5' -58.4 NC_004812.1 + 2216 0.66 0.827731
Target:  5'- uGUCgCCGCGGC-CCGCGGCccagCG-Ca -3'
miRNA:   3'- uCAGaGGUGCCGuGGCGCUGca--GCaG- -5'
21378 5' -58.4 NC_004812.1 + 56749 0.66 0.827731
Target:  5'- uGGaCUCCACGaagaagGCCGCGACGUCc-- -3'
miRNA:   3'- -UCaGAGGUGCcg----UGGCGCUGCAGcag -5'
21378 5' -58.4 NC_004812.1 + 68667 0.66 0.819432
Target:  5'- aGGUCcggcaUCCACagGGCGCUGaaGAUGUUGUCg -3'
miRNA:   3'- -UCAG-----AGGUG--CCGUGGCg-CUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 108313 0.66 0.819432
Target:  5'- nGGcCUCCuCGGcCACCGCcGCGgcCGUCu -3'
miRNA:   3'- -UCaGAGGuGCC-GUGGCGcUGCa-GCAG- -5'
21378 5' -58.4 NC_004812.1 + 16811 0.66 0.819432
Target:  5'- gAGUCUggaggaCG-GGCGCCGCGGgGUCGg- -3'
miRNA:   3'- -UCAGAg-----GUgCCGUGGCGCUgCAGCag -5'
21378 5' -58.4 NC_004812.1 + 134559 0.66 0.819432
Target:  5'- gGG-CUCCGgGGCGaaaaaaacguCCaCGugGUCGUCg -3'
miRNA:   3'- -UCaGAGGUgCCGU----------GGcGCugCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 107205 0.66 0.819432
Target:  5'- cGGgg-CCACGGCgcggGCCGCcugGGCGUCGa- -3'
miRNA:   3'- -UCagaGGUGCCG----UGGCG---CUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 59283 0.66 0.819432
Target:  5'- gGGUCgcgggCgCGCGGCacccgcccGCCGCGAgcuCGUgGUCg -3'
miRNA:   3'- -UCAGa----G-GUGCCG--------UGGCGCU---GCAgCAG- -5'
21378 5' -58.4 NC_004812.1 + 154228 0.66 0.819432
Target:  5'- cGUCUaCCugGcGCuggACCGCGACGcCG-Cg -3'
miRNA:   3'- uCAGA-GGugC-CG---UGGCGCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 28720 0.66 0.819432
Target:  5'- cGUCUaCCugGcGCuggACCGCGACGcCG-Cg -3'
miRNA:   3'- uCAGA-GGugC-CG---UGGCGCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 121723 0.66 0.818593
Target:  5'- cGUaCUCCAUcaccgagGGCACCGCG--GUCGUg -3'
miRNA:   3'- uCA-GAGGUG-------CCGUGGCGCugCAGCAg -5'
21378 5' -58.4 NC_004812.1 + 23803 0.66 0.810971
Target:  5'- cGG-CUCCAUGcGCGCCGCG-CGgggCGg- -3'
miRNA:   3'- -UCaGAGGUGC-CGUGGCGCuGCa--GCag -5'
21378 5' -58.4 NC_004812.1 + 127752 0.66 0.810971
Target:  5'- -----gCGCGGCGCgGCGGCGggguccgCGUCg -3'
miRNA:   3'- ucagagGUGCCGUGgCGCUGCa------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 93119 0.66 0.810971
Target:  5'- uGUCgggCgGCGGCGucugCGUGACGuUCGUCg -3'
miRNA:   3'- uCAGa--GgUGCCGUg---GCGCUGC-AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.