miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 27293 0.66 0.810971
Target:  5'- cGUCgCCgGCGGCGCCGaGGcCGcCGUCg -3'
miRNA:   3'- uCAGaGG-UGCCGUGGCgCU-GCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 43700 0.66 0.810971
Target:  5'- uGcCUUCGCGGCGagggcgcuCCGuCGcCGUCGUCu -3'
miRNA:   3'- uCaGAGGUGCCGU--------GGC-GCuGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 133583 0.66 0.810971
Target:  5'- cGUCcugCCggcgGCGGUAgCGCGcCGUUGUCg -3'
miRNA:   3'- uCAGa--GG----UGCCGUgGCGCuGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 127752 0.66 0.810971
Target:  5'- -----gCGCGGCGCgGCGGCGggguccgCGUCg -3'
miRNA:   3'- ucagagGUGCCGUGgCGCUGCa------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 2244 0.66 0.810971
Target:  5'- -----gCGCGGCGCgGCGGCGggguccgCGUCg -3'
miRNA:   3'- ucagagGUGCCGUGgCGCUGCa------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 20785 0.66 0.810971
Target:  5'- --gUUCCugGaGCACCuGCGGCGcgcccgCGUCg -3'
miRNA:   3'- ucaGAGGugC-CGUGG-CGCUGCa-----GCAG- -5'
21378 5' -58.4 NC_004812.1 + 152801 0.66 0.810971
Target:  5'- cGUCgCCgGCGGCGCCGaGGcCGcCGUCg -3'
miRNA:   3'- uCAGaGG-UGCCGUGGCgCU-GCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 23803 0.66 0.810971
Target:  5'- cGG-CUCCAUGcGCGCCGCG-CGgggCGg- -3'
miRNA:   3'- -UCaGAGGUGC-CGUGGCGCuGCa--GCag -5'
21378 5' -58.4 NC_004812.1 + 32263 0.66 0.810971
Target:  5'- cGUcCUCC-CGGU-CCGCGGCGUCc-- -3'
miRNA:   3'- uCA-GAGGuGCCGuGGCGCUGCAGcag -5'
21378 5' -58.4 NC_004812.1 + 15122 0.66 0.810116
Target:  5'- cGGUa-CgGCGGCGCCcccgacgGCGACGUCG-Ca -3'
miRNA:   3'- -UCAgaGgUGCCGUGG-------CGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 55656 0.66 0.810116
Target:  5'- ---gUCCGCGGCGgCGCGccccgccACGUCGg- -3'
miRNA:   3'- ucagAGGUGCCGUgGCGC-------UGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 33330 0.67 0.802356
Target:  5'- --cCUCCGCGGgGCCGcCGAcgagcuccucaaCGUgGUCa -3'
miRNA:   3'- ucaGAGGUGCCgUGGC-GCU------------GCAgCAG- -5'
21378 5' -58.4 NC_004812.1 + 137725 0.67 0.802356
Target:  5'- cGGcCUCCGCGGCGacCCGCGGgcCGcCGa- -3'
miRNA:   3'- -UCaGAGGUGCCGU--GGCGCU--GCaGCag -5'
21378 5' -58.4 NC_004812.1 + 144767 0.67 0.802356
Target:  5'- gGGUCggUCugGGCGCCaGCGGCuGgagCGUUg -3'
miRNA:   3'- -UCAGa-GGugCCGUGG-CGCUG-Ca--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 46467 0.67 0.802356
Target:  5'- gGGcCUCCGCGu--CCGgGuCGUCGUCg -3'
miRNA:   3'- -UCaGAGGUGCcguGGCgCuGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 13782 0.67 0.802356
Target:  5'- gGGUgaacgCCACGGCguugcGCCGCGggcACGcCGUCa -3'
miRNA:   3'- -UCAga---GGUGCCG-----UGGCGC---UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 126593 0.67 0.802356
Target:  5'- --cCUCCugGGUACCugGCGcACGUCuUCu -3'
miRNA:   3'- ucaGAGGugCCGUGG--CGC-UGCAGcAG- -5'
21378 5' -58.4 NC_004812.1 + 98186 0.67 0.802356
Target:  5'- cGG-CUCCGCGGCcgcuuccaucgGCCGCGGCaggaCGUUc -3'
miRNA:   3'- -UCaGAGGUGCCG-----------UGGCGCUGca--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 147454 0.67 0.802356
Target:  5'- uGUCccCCACGGUccgcGCCGCGACGcUCc-- -3'
miRNA:   3'- uCAGa-GGUGCCG----UGGCGCUGC-AGcag -5'
21378 5' -58.4 NC_004812.1 + 1084 0.67 0.802356
Target:  5'- --cCUCCugGGUACCugGCGcACGUCuUCu -3'
miRNA:   3'- ucaGAGGugCCGUGG--CGC-UGCAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.