miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 11385 0.72 0.493767
Target:  5'- gGGgaucgCUCCAccaccgcguucCGGUACCGCGACGcCGUg -3'
miRNA:   3'- -UCa----GAGGU-----------GCCGUGGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 12010 0.67 0.787378
Target:  5'- cGGUCUCCGCGGagccaccuucaggaaCACCacguggcGCGcCGcCGUCg -3'
miRNA:   3'- -UCAGAGGUGCC---------------GUGG-------CGCuGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 13312 0.7 0.620344
Target:  5'- cGUCUCCGCcGCGCCG-GGgGUCGg- -3'
miRNA:   3'- uCAGAGGUGcCGUGGCgCUgCAGCag -5'
21378 5' -58.4 NC_004812.1 + 13782 0.67 0.802356
Target:  5'- gGGUgaacgCCACGGCguugcGCCGCGggcACGcCGUCa -3'
miRNA:   3'- -UCAga---GGUGCCG-----UGGCGC---UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 15122 0.66 0.810116
Target:  5'- cGGUa-CgGCGGCGCCcccgacgGCGACGUCG-Ca -3'
miRNA:   3'- -UCAgaGgUGCCGUGG-------CGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 16222 0.68 0.738409
Target:  5'- uGGUgUCCGUGGCGagCGCGGCGUUGg- -3'
miRNA:   3'- -UCAgAGGUGCCGUg-GCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 16811 0.66 0.819432
Target:  5'- gAGUCUggaggaCG-GGCGCCGCGGgGUCGg- -3'
miRNA:   3'- -UCAGAg-----GUgCCGUGGCGCUgCAGCag -5'
21378 5' -58.4 NC_004812.1 + 17725 0.7 0.600429
Target:  5'- cAGgCUCUGCGGCGCCGCggaGACGUaggccaUGUCc -3'
miRNA:   3'- -UCaGAGGUGCCGUGGCG---CUGCA------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 18181 0.68 0.728854
Target:  5'- gGGUCcCCGCGGU-CCGaCGGCGUC-UCc -3'
miRNA:   3'- -UCAGaGGUGCCGuGGC-GCUGCAGcAG- -5'
21378 5' -58.4 NC_004812.1 + 18358 0.69 0.689925
Target:  5'- ----aCCGCGGcCGCCGCGGCGUaCG-Cg -3'
miRNA:   3'- ucagaGGUGCC-GUGGCGCUGCA-GCaG- -5'
21378 5' -58.4 NC_004812.1 + 18718 0.73 0.466112
Target:  5'- uAG-CUCCGCGGCGCUGgGGCGcCG-Cg -3'
miRNA:   3'- -UCaGAGGUGCCGUGGCgCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 19736 0.69 0.650263
Target:  5'- --cCUCCucgucCGGgAaCGCGACGUCGUCg -3'
miRNA:   3'- ucaGAGGu----GCCgUgGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 19880 0.74 0.388392
Target:  5'- cGUCUCCAgCGGCGCgGCGGCGggggacgCGg- -3'
miRNA:   3'- uCAGAGGU-GCCGUGgCGCUGCa------GCag -5'
21378 5' -58.4 NC_004812.1 + 20016 0.66 0.827731
Target:  5'- cGUCUCCGCGcGCGUCGCGGCa----- -3'
miRNA:   3'- uCAGAGGUGC-CGUGGCGCUGcagcag -5'
21378 5' -58.4 NC_004812.1 + 20313 0.73 0.457073
Target:  5'- cGUCcagcgCC-CGGgGCCGCGACG-CGUCg -3'
miRNA:   3'- uCAGa----GGuGCCgUGGCGCUGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 20785 0.66 0.810971
Target:  5'- --gUUCCugGaGCACCuGCGGCGcgcccgCGUCg -3'
miRNA:   3'- ucaGAGGugC-CGUGG-CGCUGCa-----GCAG- -5'
21378 5' -58.4 NC_004812.1 + 21159 0.68 0.745046
Target:  5'- gGGUCUCgGC-GUGCCGCGggacgccgaggcgcGCGUCGUg -3'
miRNA:   3'- -UCAGAGgUGcCGUGGCGC--------------UGCAGCAg -5'
21378 5' -58.4 NC_004812.1 + 21800 0.71 0.551139
Target:  5'- -uUCgCCGCGGUACC-CGACGgCGUCa -3'
miRNA:   3'- ucAGaGGUGCCGUGGcGCUGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 22483 0.7 0.621341
Target:  5'- uAGUCUUCcccgaccccaucggcGCGcggaccaccgucacGCACCGCGACGUCGg- -3'
miRNA:   3'- -UCAGAGG---------------UGC--------------CGUGGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 23803 0.66 0.810971
Target:  5'- cGG-CUCCAUGcGCGCCGCG-CGgggCGg- -3'
miRNA:   3'- -UCaGAGGUGC-CGUGGCGCuGCa--GCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.