miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 1084 0.67 0.802356
Target:  5'- --cCUCCugGGUACCugGCGcACGUCuUCu -3'
miRNA:   3'- ucaGAGGugCCGUGG--CGC-UGCAGcAG- -5'
21378 5' -58.4 NC_004812.1 + 1230 0.68 0.71922
Target:  5'- cGGgggCUCCuccccgcccggGCGGCGCCGCGGCcgccCGUUg -3'
miRNA:   3'- -UCa--GAGG-----------UGCCGUGGCGCUGca--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 1667 0.7 0.640294
Target:  5'- cGUUggCCGCGGCGCCGCGGCccgcccgCGg- -3'
miRNA:   3'- uCAGa-GGUGCCGUGGCGCUGca-----GCag -5'
21378 5' -58.4 NC_004812.1 + 2177 0.79 0.191131
Target:  5'- --cCUCCACGGCG--GCGGCGUCGUCg -3'
miRNA:   3'- ucaGAGGUGCCGUggCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 2216 0.66 0.827731
Target:  5'- uGUCgCCGCGGC-CCGCGGCccagCG-Ca -3'
miRNA:   3'- uCAGaGGUGCCGuGGCGCUGca--GCaG- -5'
21378 5' -58.4 NC_004812.1 + 2244 0.66 0.810971
Target:  5'- -----gCGCGGCGCgGCGGCGggguccgCGUCg -3'
miRNA:   3'- ucagagGUGCCGUGgCGCUGCa------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 2335 0.66 0.851587
Target:  5'- gGGUCUCCGCGGaggACgGgGgGCG-CGUCc -3'
miRNA:   3'- -UCAGAGGUGCCg--UGgCgC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 2360 0.75 0.34153
Target:  5'- cGUCgggCC-CGGCGCgCGCGGCGUCG-Cg -3'
miRNA:   3'- uCAGa--GGuGCCGUG-GCGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 2621 0.68 0.747876
Target:  5'- cGUUggcgCCGCGGCccaggcGCgGCGGCGgcgCGUCc -3'
miRNA:   3'- uCAGa---GGUGCCG------UGgCGCUGCa--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 3861 0.68 0.738409
Target:  5'- uGGUCgCCGCGGcCGCCGCGGCc-CG-Ca -3'
miRNA:   3'- -UCAGaGGUGCC-GUGGCGCUGcaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 4038 0.81 0.145282
Target:  5'- --aCUCgGCGGCggcggcgGCCGCGGCGUCGUCg -3'
miRNA:   3'- ucaGAGgUGCCG-------UGGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 4110 0.69 0.650263
Target:  5'- cGUcCUCCcCGGCGCCGgCGGgGcccUCGUCg -3'
miRNA:   3'- uCA-GAGGuGCCGUGGC-GCUgC---AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 4160 0.66 0.843028
Target:  5'- cGGcgCUgCGCGGCGaugacgcCCGCGGCGcCGUa -3'
miRNA:   3'- -UCa-GAgGUGCCGU-------GGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 4770 0.69 0.680058
Target:  5'- cGGg--CCACGGCucGCCGCuGGCGUaccCGUCg -3'
miRNA:   3'- -UCagaGGUGCCG--UGGCG-CUGCA---GCAG- -5'
21378 5' -58.4 NC_004812.1 + 5303 0.68 0.738409
Target:  5'- --cCUCgGCGaGCuCCGCGagcGCGUCGUCc -3'
miRNA:   3'- ucaGAGgUGC-CGuGGCGC---UGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 5348 0.71 0.551139
Target:  5'- gGGUCggCgGgGGCGCgGCGGCGUCGa- -3'
miRNA:   3'- -UCAGa-GgUgCCGUGgCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 6009 0.67 0.757247
Target:  5'- cGUCggcgcgCgGCGGCGCCGCccCGUCGa- -3'
miRNA:   3'- uCAGa-----GgUGCCGUGGCGcuGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 7863 0.66 0.851587
Target:  5'- cGGUCguaGCGGCGCCccGCG-CGUCG-Cg -3'
miRNA:   3'- -UCAGaggUGCCGUGG--CGCuGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 8444 0.66 0.851587
Target:  5'- --cUUCCGCuccCACCGCcGCGUCGUCc -3'
miRNA:   3'- ucaGAGGUGcc-GUGGCGcUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 10547 0.69 0.680058
Target:  5'- cGUCgacuggUCCACGuaGCGCCGCGACccuggCGUCc -3'
miRNA:   3'- uCAG------AGGUGC--CGUGGCGCUGca---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.