miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 23803 0.66 0.810971
Target:  5'- cGG-CUCCAUGcGCGCCGCG-CGgggCGg- -3'
miRNA:   3'- -UCaGAGGUGC-CGUGGCGCuGCa--GCag -5'
21378 5' -58.4 NC_004812.1 + 35992 0.66 0.849275
Target:  5'- cGUCUCCACgaugaggcgcuccaGGCugCgguggcgggcgGCGAUGUCGg- -3'
miRNA:   3'- uCAGAGGUG--------------CCGugG-----------CGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 2335 0.66 0.851587
Target:  5'- gGGUCUCCGCGGaggACgGgGgGCG-CGUCc -3'
miRNA:   3'- -UCAGAGGUGCCg--UGgCgC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 20016 0.66 0.827731
Target:  5'- cGUCUCCGCGcGCGUCGCGGCa----- -3'
miRNA:   3'- uCAGAGGUGC-CGUGGCGCUGcagcag -5'
21378 5' -58.4 NC_004812.1 + 56749 0.66 0.827731
Target:  5'- uGGaCUCCACGaagaagGCCGCGACGUCc-- -3'
miRNA:   3'- -UCaGAGGUGCcg----UGGCGCUGCAGcag -5'
21378 5' -58.4 NC_004812.1 + 127752 0.66 0.810971
Target:  5'- -----gCGCGGCGCgGCGGCGggguccgCGUCg -3'
miRNA:   3'- ucagagGUGCCGUGgCGCUGCa------GCAG- -5'
21378 5' -58.4 NC_004812.1 + 101494 0.66 0.835861
Target:  5'- gGGUC-CgGCGGUagaagACCGCcGgGUCGUCg -3'
miRNA:   3'- -UCAGaGgUGCCG-----UGGCGcUgCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 99462 0.66 0.835861
Target:  5'- cGUCgcgcagCCcCaGCACCGCGGCGgCGUa -3'
miRNA:   3'- uCAGa-----GGuGcCGUGGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 135618 0.66 0.827731
Target:  5'- -----gCGCGGCGgCGaCGACGUCGUUc -3'
miRNA:   3'- ucagagGUGCCGUgGC-GCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 93119 0.66 0.810971
Target:  5'- uGUCgggCgGCGGCGucugCGUGACGuUCGUCg -3'
miRNA:   3'- uCAGa--GgUGCCGUg---GCGCUGC-AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 38764 0.66 0.851587
Target:  5'- cGGUCguaGCGGCGCCccGCG-CGUCG-Cg -3'
miRNA:   3'- -UCAGaggUGCCGUGG--CGCuGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 65756 0.66 0.835861
Target:  5'- cGcCUCCGCGGCgccggcuuccgcGCCGCgGGCGcCGg- -3'
miRNA:   3'- uCaGAGGUGCCG------------UGGCG-CUGCaGCag -5'
21378 5' -58.4 NC_004812.1 + 15122 0.66 0.810116
Target:  5'- cGGUa-CgGCGGCGCCcccgacgGCGACGUCG-Ca -3'
miRNA:   3'- -UCAgaGgUGCCGUGG-------CGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 106279 0.66 0.835861
Target:  5'- cGGUCUUaucgacucCGGCuACCGCGGaaccauccaggcCGUCGUCc -3'
miRNA:   3'- -UCAGAGgu------GCCG-UGGCGCU------------GCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 96713 0.66 0.843028
Target:  5'- cGGggUCCGCGGCggcgauagggcucGCCGUGgGCGUCGg- -3'
miRNA:   3'- -UCagAGGUGCCG-------------UGGCGC-UGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 154228 0.66 0.819432
Target:  5'- cGUCUaCCugGcGCuggACCGCGACGcCG-Cg -3'
miRNA:   3'- uCAGA-GGugC-CG---UGGCGCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 129669 0.66 0.843028
Target:  5'- cGGcgCUgCGCGGCGaugacgcCCGCGGCGcCGUa -3'
miRNA:   3'- -UCa-GAgGUGCCGU-------GGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 55656 0.66 0.810116
Target:  5'- ---gUCCGCGGCGgCGCGccccgccACGUCGg- -3'
miRNA:   3'- ucagAGGUGCCGUgGCGC-------UGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 148373 0.66 0.851587
Target:  5'- uAGUCgucgaCCGCGGCcagguACCGgGACGacauUCGUg -3'
miRNA:   3'- -UCAGa----GGUGCCG-----UGGCgCUGC----AGCAg -5'
21378 5' -58.4 NC_004812.1 + 32263 0.66 0.810971
Target:  5'- cGUcCUCC-CGGU-CCGCGGCGUCc-- -3'
miRNA:   3'- uCA-GAGGuGCCGuGGCGCUGCAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.