miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 94344 0.71 0.580602
Target:  5'- gGGUCUCCGCGcGCGgCGCGGCccCGg- -3'
miRNA:   3'- -UCAGAGGUGC-CGUgGCGCUGcaGCag -5'
21378 5' -58.4 NC_004812.1 + 124043 0.72 0.493767
Target:  5'- cGGg--CCGCGGCGCCGCGgccaacgggggaGCGgcgCGUCa -3'
miRNA:   3'- -UCagaGGUGCCGUGGCGC------------UGCa--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 59999 0.72 0.50221
Target:  5'- aGGUCcuucgggUCCGCGGgGCCG--GCGUCGUCg -3'
miRNA:   3'- -UCAG-------AGGUGCCgUGGCgcUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 73836 0.72 0.512614
Target:  5'- cGUC-CCAgCGGCACCcgacucgcGCGucaGCGUCGUCg -3'
miRNA:   3'- uCAGaGGU-GCCGUGG--------CGC---UGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 67332 0.71 0.531751
Target:  5'- gGGgCUCCGCGccGCGCCGCGGCcugcgCGUCc -3'
miRNA:   3'- -UCaGAGGUGC--CGUGGCGCUGca---GCAG- -5'
21378 5' -58.4 NC_004812.1 + 72204 0.71 0.550165
Target:  5'- gGGUCgucgcggggcgUCCGCGGCcucgcggACUGCGGCGgggCGUCc -3'
miRNA:   3'- -UCAG-----------AGGUGCCG-------UGGCGCUGCa--GCAG- -5'
21378 5' -58.4 NC_004812.1 + 130856 0.71 0.551139
Target:  5'- gGGUCggCgGgGGCGCgGCGGCGUCGa- -3'
miRNA:   3'- -UCAGa-GgUgCCGUGgCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 56430 0.71 0.551139
Target:  5'- cGGUCcgCCA-GGCGCCG-GGCGaUCGUCg -3'
miRNA:   3'- -UCAGa-GGUgCCGUGGCgCUGC-AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 102141 0.71 0.570738
Target:  5'- uGUCguagUCCAUGGCcuCCGCGucggcccCGUCGUCg -3'
miRNA:   3'- uCAG----AGGUGCCGu-GGCGCu------GCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 90793 0.72 0.484463
Target:  5'- gGGUUcggggagccagUCCACGGCcUgGCGGCGUCGUg -3'
miRNA:   3'- -UCAG-----------AGGUGCCGuGgCGCUGCAGCAg -5'
21378 5' -58.4 NC_004812.1 + 38853 0.72 0.484463
Target:  5'- uGGUCcuccugcaugUCCAgcaggUGGCG-CGCGACGUCGUCg -3'
miRNA:   3'- -UCAG----------AGGU-----GCCGUgGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 104846 0.72 0.484463
Target:  5'- cGGUCUggcucuuggCCGCgccGGCgGCCGCGGCgGUCGUCg -3'
miRNA:   3'- -UCAGA---------GGUG---CCG-UGGCGCUG-CAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 102046 0.81 0.145646
Target:  5'- cGUCUcCCGCGGCGCCcCGGCGcCGUCg -3'
miRNA:   3'- uCAGA-GGUGCCGUGGcGCUGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 127686 0.79 0.191131
Target:  5'- --cCUCCACGGCG--GCGGCGUCGUCg -3'
miRNA:   3'- ucaGAGGUGCCGUggCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 138885 0.76 0.298893
Target:  5'- cGUCUCCGCGGCGCCGCaGAgccUGcUgGUCg -3'
miRNA:   3'- uCAGAGGUGCCGUGGCG-CU---GC-AgCAG- -5'
21378 5' -58.4 NC_004812.1 + 127868 0.75 0.34153
Target:  5'- cGUCgggCC-CGGCGCgCGCGGCGUCG-Cg -3'
miRNA:   3'- uCAGa--GGuGCCGUG-GCGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 100960 0.75 0.34905
Target:  5'- --gCUCCGCGaGCACCGCcagGACGUCGa- -3'
miRNA:   3'- ucaGAGGUGC-CGUGGCG---CUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 19880 0.74 0.388392
Target:  5'- cGUCUCCAgCGGCGCgGCGGCGggggacgCGg- -3'
miRNA:   3'- uCAGAGGU-GCCGUGgCGCUGCa------GCag -5'
21378 5' -58.4 NC_004812.1 + 93732 0.73 0.439282
Target:  5'- gGG-CUCCGCGGCagacggggccGCCGCGGaGUCGUUu -3'
miRNA:   3'- -UCaGAGGUGCCG----------UGGCGCUgCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 106510 0.73 0.463391
Target:  5'- ---gUCCGCGGCgcggggcgccggcgGCCGCGGCGccuUCGUCa -3'
miRNA:   3'- ucagAGGUGCCG--------------UGGCGCUGC---AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.