miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 144555 1.1 0.001792
Target:  5'- cAGUCUCCACGGCACCGCGACGUCGUCg -3'
miRNA:   3'- -UCAGAGGUGCCGUGGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 5348 0.71 0.551139
Target:  5'- gGGUCggCgGgGGCGCgGCGGCGUCGa- -3'
miRNA:   3'- -UCAGa-GgUgCCGUGgCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 43623 0.71 0.555044
Target:  5'- -cUCggcggCCGCGGCGCCGCGAuccaucgccgccggaCGUCGcCu -3'
miRNA:   3'- ucAGa----GGUGCCGUGGCGCU---------------GCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 38764 0.66 0.851587
Target:  5'- cGGUCguaGCGGCGCCccGCG-CGUCG-Cg -3'
miRNA:   3'- -UCAGaggUGCCGUGG--CGCuGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 2360 0.75 0.34153
Target:  5'- cGUCgggCC-CGGCGCgCGCGGCGUCG-Cg -3'
miRNA:   3'- uCAGa--GGuGCCGUG-GCGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 125887 0.73 0.430535
Target:  5'- --cCUgCGCGGaCGCCGUGGCGUcCGUCg -3'
miRNA:   3'- ucaGAgGUGCC-GUGGCGCUGCA-GCAG- -5'
21378 5' -58.4 NC_004812.1 + 51254 0.73 0.457073
Target:  5'- cGUCUCCGCGGgcCACCGgGcCcUCGUCg -3'
miRNA:   3'- uCAGAGGUGCC--GUGGCgCuGcAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 18718 0.73 0.466112
Target:  5'- uAG-CUCCGCGGCGCUGgGGCGcCG-Cg -3'
miRNA:   3'- -UCaGAGGUGCCGUGGCgCUGCaGCaG- -5'
21378 5' -58.4 NC_004812.1 + 11385 0.72 0.493767
Target:  5'- gGGgaucgCUCCAccaccgcguucCGGUACCGCGACGcCGUg -3'
miRNA:   3'- -UCa----GAGGU-----------GCCGUGGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 123393 0.71 0.550165
Target:  5'- uGGUCUgCACGGCGUCGgGGCGgaugaaguuggccUCGUCg -3'
miRNA:   3'- -UCAGAgGUGCCGUGGCgCUGC-------------AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 100823 0.71 0.531751
Target:  5'- cGUCUCggggGCgGGCGCCGCGACGcCGg- -3'
miRNA:   3'- uCAGAGg---UG-CCGUGGCGCUGCaGCag -5'
21378 5' -58.4 NC_004812.1 + 58066 0.72 0.475244
Target:  5'- uGGaCUCCcuCGGCGCCcuGCGACGgcUCGUCg -3'
miRNA:   3'- -UCaGAGGu-GCCGUGG--CGCUGC--AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 4038 0.81 0.145282
Target:  5'- --aCUCgGCGGCggcggcgGCCGCGGCGUCGUCg -3'
miRNA:   3'- ucaGAGgUGCCG-------UGGCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 114959 0.71 0.531751
Target:  5'- ---gUCCGCGGCGuuGgCGACGUCGg- -3'
miRNA:   3'- ucagAGGUGCCGUggC-GCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 2177 0.79 0.191131
Target:  5'- --cCUCCACGGCG--GCGGCGUCGUCg -3'
miRNA:   3'- ucaGAGGUGCCGUggCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 47759 0.72 0.475244
Target:  5'- aGGUCagcgCCGCGGCGCUGgGgGCGUCGg- -3'
miRNA:   3'- -UCAGa---GGUGCCGUGGCgC-UGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 124791 0.71 0.540447
Target:  5'- uGGUC-CCGCGGCACCacuacgccaccaaGgGGCGguUCGUCg -3'
miRNA:   3'- -UCAGaGGUGCCGUGG-------------CgCUGC--AGCAG- -5'
21378 5' -58.4 NC_004812.1 + 21800 0.71 0.551139
Target:  5'- -uUCgCCGCGGUACC-CGACGgCGUCa -3'
miRNA:   3'- ucAGaGGUGCCGUGGcGCUGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 48244 0.77 0.260494
Target:  5'- gGGcCUCCuGCaGCGCgGCGACGUCGUCc -3'
miRNA:   3'- -UCaGAGG-UGcCGUGgCGCUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 20313 0.73 0.457073
Target:  5'- cGUCcagcgCC-CGGgGCCGCGACG-CGUCg -3'
miRNA:   3'- uCAGa----GGuGCCgUGGCGCUGCaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.