miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 79784 0.66 0.946528
Target:  5'- aGGCCGUGGgGGuCGAAgagguacgccucguCGCCGuc-GCGg -3'
miRNA:   3'- -CCGGUACCgCU-GCUU--------------GCGGCugaUGC- -5'
21379 5' -55.6 NC_004812.1 + 117611 0.66 0.92377
Target:  5'- gGGCCGggggagggggGGCGGCGcgggcCGCCGGgcGCGg -3'
miRNA:   3'- -CCGGUa---------CCGCUGCuu---GCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 115413 0.66 0.943462
Target:  5'- cGCCccGcGCGGC--GCGCCGACcgGCGc -3'
miRNA:   3'- cCGGuaC-CGCUGcuUGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 155254 0.66 0.938887
Target:  5'- gGGCCGaggggggGcGCGGCGGACGCCaaaccggggaggGGCgggGCGc -3'
miRNA:   3'- -CCGGUa------C-CGCUGCUUGCGG------------CUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 19323 0.66 0.934081
Target:  5'- uGGCgaaaCAUGGCGAUcAGCGCCGGg-GCc -3'
miRNA:   3'- -CCG----GUACCGCUGcUUGCGGCUgaUGc -5'
21379 5' -55.6 NC_004812.1 + 109605 0.66 0.929042
Target:  5'- uGGCCAUGGCGccccgggggcagGCGuucgcagcccuGGCGCgCGACgACu -3'
miRNA:   3'- -CCGGUACCGC------------UGC-----------UUGCG-GCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 81427 0.66 0.938887
Target:  5'- cGGCCAUGGCGucCGGG-GCCcagGGCcccagGCGa -3'
miRNA:   3'- -CCGGUACCGCu-GCUUgCGG---CUGa----UGC- -5'
21379 5' -55.6 NC_004812.1 + 134970 0.66 0.92323
Target:  5'- cGUCGUGGCGGacaccagcucggcCGAGCGCCGcCggGCc -3'
miRNA:   3'- cCGGUACCGCU-------------GCUUGCGGCuGa-UGc -5'
21379 5' -55.6 NC_004812.1 + 24489 0.66 0.938887
Target:  5'- cGGCCGcuccUGGaCGGgGGgcccccGCGCCGcggggGCUGCGg -3'
miRNA:   3'- -CCGGU----ACC-GCUgCU------UGCGGC-----UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 45458 0.66 0.934081
Target:  5'- cGCCGggggGGCGAgGAGC-CCGA--GCGg -3'
miRNA:   3'- cCGGUa---CCGCUgCUUGcGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 109317 0.66 0.92377
Target:  5'- cGCC--GGCGGCGcuggaggcGGCGCCGcGCUACc -3'
miRNA:   3'- cCGGuaCCGCUGC--------UUGCGGC-UGAUGc -5'
21379 5' -55.6 NC_004812.1 + 77868 0.66 0.947384
Target:  5'- cGGUCuucGGCGGCGGcccggaccuccucGCGCCGG--GCGa -3'
miRNA:   3'- -CCGGua-CCGCUGCU-------------UGCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 39336 0.66 0.943462
Target:  5'- cGGCCGUGccGCGcuCGAACGCCcccaGC-ACGg -3'
miRNA:   3'- -CCGGUAC--CGCu-GCUUGCGGc---UGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 108385 0.66 0.929042
Target:  5'- aGGCCcugGGCcGCGGggcuccgcucGCGCCGGCgcACGu -3'
miRNA:   3'- -CCGGua-CCGcUGCU----------UGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 107357 0.66 0.934081
Target:  5'- cGGCCGUugggGGCGGgggGAugGCCGGa-ACGg -3'
miRNA:   3'- -CCGGUA----CCGCUg--CUugCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 129140 0.66 0.934081
Target:  5'- cGCCGgcgGGCGcGCG-GCGCCGcccgcguCUGCGu -3'
miRNA:   3'- cCGGUa--CCGC-UGCuUGCGGCu------GAUGC- -5'
21379 5' -55.6 NC_004812.1 + 99779 0.66 0.943462
Target:  5'- aGGCUcucGGgGACGGaguugugcggcGCGCCGccaGCUGCGc -3'
miRNA:   3'- -CCGGua-CCgCUGCU-----------UGCGGC---UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 105160 0.66 0.943462
Target:  5'- uGGCCGUaGCGccccgccuGCGAGCGgCCGcgugcCUGCGa -3'
miRNA:   3'- -CCGGUAcCGC--------UGCUUGC-GGCu----GAUGC- -5'
21379 5' -55.6 NC_004812.1 + 77033 0.66 0.943462
Target:  5'- uGGCCucuAUGGCG-CGcacGCGCgCGGCgagGCGc -3'
miRNA:   3'- -CCGG---UACCGCuGCu--UGCG-GCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 98619 0.66 0.934081
Target:  5'- uGGCCGUcGCGGCcgucGCgGCCGcGCUGCGc -3'
miRNA:   3'- -CCGGUAcCGCUGcu--UG-CGGC-UGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.