miRNA display CGI


Results 21 - 40 of 612 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 129005 0.66 0.92377
Target:  5'- gGGCCGcgGGCG-CGGGCccgggGCCGGCgGCc -3'
miRNA:   3'- -CCGGUa-CCGCuGCUUG-----CGGCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 82750 0.66 0.947808
Target:  5'- cGCCcUGaccGCGACG-ACGCUGACgcGCGa -3'
miRNA:   3'- cCGGuAC---CGCUGCuUGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 23484 0.66 0.929042
Target:  5'- uGGCgGUGGuCGAgGGGCuGCUGucgcACUACGu -3'
miRNA:   3'- -CCGgUACC-GCUgCUUG-CGGC----UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 119488 0.66 0.934081
Target:  5'- gGGCCGcGGCGGCagGGGCGgCGuCcGCGg -3'
miRNA:   3'- -CCGGUaCCGCUG--CUUGCgGCuGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 125356 0.66 0.922144
Target:  5'- nGGCCGagagugagGGUGGCGAGCGCguggacgcaccuccCGACgUGCu -3'
miRNA:   3'- -CCGGUa-------CCGCUGCUUGCG--------------GCUG-AUGc -5'
21379 5' -55.6 NC_004812.1 + 39396 0.66 0.92377
Target:  5'- uGGCCcgcagcUGGCGGUGcgUGCCGAC-GCGg -3'
miRNA:   3'- -CCGGu-----ACCGCUGCuuGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 33531 0.66 0.938887
Target:  5'- gGGCCAgaGCcGCGAG-GCCGACgACGa -3'
miRNA:   3'- -CCGGUacCGcUGCUUgCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 107950 0.66 0.938887
Target:  5'- cGGCCAUcGcGCGGCGAGgCGCgGGau-CGg -3'
miRNA:   3'- -CCGGUA-C-CGCUGCUU-GCGgCUgauGC- -5'
21379 5' -55.6 NC_004812.1 + 155254 0.66 0.938887
Target:  5'- gGGCCGaggggggGcGCGGCGGACGCCaaaccggggaggGGCgggGCGc -3'
miRNA:   3'- -CCGGUa------C-CGCUGCUUGCGG------------CUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 101297 0.66 0.92377
Target:  5'- cGCCcgGGCGuCGGcccGCGCCGAg---- -3'
miRNA:   3'- cCGGuaCCGCuGCU---UGCGGCUgaugc -5'
21379 5' -55.6 NC_004812.1 + 85615 0.66 0.929042
Target:  5'- cGGCCcUGGCGGcCGAccCGCgGGCcccGCGg -3'
miRNA:   3'- -CCGGuACCGCU-GCUu-GCGgCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 151728 0.66 0.934081
Target:  5'- cGCCGUGGCcgGGCGcGACGCCacgGGCcGCu -3'
miRNA:   3'- cCGGUACCG--CUGC-UUGCGG---CUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 121243 0.66 0.938887
Target:  5'- aGGCCGUgGGCGGgGu-CGCCGggguACUcggGCGg -3'
miRNA:   3'- -CCGGUA-CCGCUgCuuGCGGC----UGA---UGC- -5'
21379 5' -55.6 NC_004812.1 + 129140 0.66 0.934081
Target:  5'- cGCCGgcgGGCGcGCG-GCGCCGcccgcguCUGCGu -3'
miRNA:   3'- cCGGUa--CCGC-UGCuUGCGGCu------GAUGC- -5'
21379 5' -55.6 NC_004812.1 + 102741 0.66 0.929042
Target:  5'- cGCCAUGuCGAgGGACGCguaGGCgGCGg -3'
miRNA:   3'- cCGGUACcGCUgCUUGCGg--CUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 45458 0.66 0.934081
Target:  5'- cGCCGggggGGCGAgGAGC-CCGA--GCGg -3'
miRNA:   3'- cCGGUa---CCGCUgCUUGcGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 19323 0.66 0.934081
Target:  5'- uGGCgaaaCAUGGCGAUcAGCGCCGGg-GCc -3'
miRNA:   3'- -CCG----GUACCGCUGcUUGCGGCUgaUGc -5'
21379 5' -55.6 NC_004812.1 + 87324 0.66 0.928525
Target:  5'- gGGCC-UGGagcgcggccCGACGAugcggcucauggaGCGCgGGCUGCa -3'
miRNA:   3'- -CCGGuACC---------GCUGCU-------------UGCGgCUGAUGc -5'
21379 5' -55.6 NC_004812.1 + 71955 0.66 0.938887
Target:  5'- cGGCCcUGccGCGACGcGCGCCGcgggagGCUcACGc -3'
miRNA:   3'- -CCGGuAC--CGCUGCuUGCGGC------UGA-UGC- -5'
21379 5' -55.6 NC_004812.1 + 55939 0.66 0.929042
Target:  5'- uGGCC-UGGCccccGACGAggagcGCGUCGACcAUGu -3'
miRNA:   3'- -CCGGuACCG----CUGCU-----UGCGGCUGaUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.