miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 3793 0.66 0.943462
Target:  5'- cGCgCAcGGCGGCGAcggcggccucgGCGCCGcCgGCGa -3'
miRNA:   3'- cCG-GUaCCGCUGCU-----------UGCGGCuGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 3894 0.67 0.887298
Target:  5'- aGCCAgaGGCG-CGGGCGCggCGGCgcgGCGg -3'
miRNA:   3'- cCGGUa-CCGCuGCUUGCG--GCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 3927 0.67 0.893943
Target:  5'- gGGCCGcgcGGCGGCGGcacggcGCGCgCGGCcGCc -3'
miRNA:   3'- -CCGGUa--CCGCUGCU------UGCG-GCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 4026 0.71 0.74557
Target:  5'- aGGCCGUgaggcacucGGCGGCG-GCGgCGGCcGCGg -3'
miRNA:   3'- -CCGGUA---------CCGCUGCuUGCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 4095 0.68 0.858566
Target:  5'- cGGCCccGGCGGgGccguccuccccGGCGCCGGCgggGCc -3'
miRNA:   3'- -CCGGuaCCGCUgC-----------UUGCGGCUGa--UGc -5'
21379 5' -55.6 NC_004812.1 + 4149 0.67 0.918266
Target:  5'- cGGCCGccaGGCGGCGcugcgcggcgauGACGCCcGCgGCGc -3'
miRNA:   3'- -CCGGUa--CCGCUGC------------UUGCGGcUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 4242 0.7 0.773783
Target:  5'- cGGCgGcGGCGGCGGcgGCGCCcGCcGCGg -3'
miRNA:   3'- -CCGgUaCCGCUGCU--UGCGGcUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 4355 0.79 0.313766
Target:  5'- cGGCuCAUGGCGACGGcgGCGgCGGCgUGCGc -3'
miRNA:   3'- -CCG-GUACCGCUGCU--UGCgGCUG-AUGC- -5'
21379 5' -55.6 NC_004812.1 + 4410 0.74 0.556174
Target:  5'- cGGCCAUGGCGuagcccagguGCGGcacgGCGCgGGCcACGg -3'
miRNA:   3'- -CCGGUACCGC----------UGCU----UGCGgCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 4625 0.67 0.893943
Target:  5'- aGCUcgGGCGcccacACGGGCGCgGGCgcgccgGCGg -3'
miRNA:   3'- cCGGuaCCGC-----UGCUUGCGgCUGa-----UGC- -5'
21379 5' -55.6 NC_004812.1 + 4745 0.68 0.858566
Target:  5'- cGCCccgggGGCGGCGGcucgGCGCCgGGCcACGg -3'
miRNA:   3'- cCGGua---CCGCUGCU----UGCGG-CUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 4896 0.79 0.306731
Target:  5'- cGGCCAcGGCGGCGcgcgcGCGCCGccgcucGCUGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCu----UGCGGC------UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 4957 0.75 0.51704
Target:  5'- cGGCCGgcgGGCGGCcGGCGgCGGCgagGCGg -3'
miRNA:   3'- -CCGGUa--CCGCUGcUUGCgGCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 5041 0.67 0.918266
Target:  5'- gGGCCGggGGCGcGCGAggGCGCCGcGCcccCGg -3'
miRNA:   3'- -CCGGUa-CCGC-UGCU--UGCGGC-UGau-GC- -5'
21379 5' -55.6 NC_004812.1 + 5120 0.7 0.76449
Target:  5'- gGGUCcgGGgGGCGGGCGCgGAg-GCGg -3'
miRNA:   3'- -CCGGuaCCgCUGCUUGCGgCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 5134 0.69 0.834908
Target:  5'- gGGCCGcccGGgGACGGcgGCGUCGGCccGCGg -3'
miRNA:   3'- -CCGGUa--CCgCUGCU--UGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 5477 0.68 0.858566
Target:  5'- gGGCCAgcUGGCG-CGGggacACGgCGGCgGCGg -3'
miRNA:   3'- -CCGGU--ACCGCuGCU----UGCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 5666 0.71 0.73596
Target:  5'- cGCCGgggGGCGucggaguccugcGCGAACGCCGcGCgGCGg -3'
miRNA:   3'- cCGGUa--CCGC------------UGCUUGCGGC-UGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 5879 0.73 0.615261
Target:  5'- gGGCCGgggGGCG-CGGGCGCgGGCUcaggggccgccggGCGg -3'
miRNA:   3'- -CCGGUa--CCGCuGCUUGCGgCUGA-------------UGC- -5'
21379 5' -55.6 NC_004812.1 + 5970 0.67 0.896539
Target:  5'- aGGCCGcggGGgGGCGAgucgcggggugguagGCGCCGGgggGCGa -3'
miRNA:   3'- -CCGGUa--CCgCUGCU---------------UGCGGCUga-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.