miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 542 0.71 0.69673
Target:  5'- aGCCGgaaGGCGGCGAcGCGCCGcGCgACGc -3'
miRNA:   3'- cCGGUa--CCGCUGCU-UGCGGC-UGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 1226 0.67 0.91253
Target:  5'- cGGCCcccggGGUuccuGGCGGACggcuugucugcgGCUGACUGCGa -3'
miRNA:   3'- -CCGGua---CCG----CUGCUUG------------CGGCUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 1244 0.68 0.861589
Target:  5'- cGCCcgGGCGGCGccgcggccgcccguuGGucCGCCGGCcGCGg -3'
miRNA:   3'- cCGGuaCCGCUGC---------------UU--GCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 1376 0.67 0.918266
Target:  5'- cGCCGUGcGCGACGGcccgccccGCGCCG-Cg--- -3'
miRNA:   3'- cCGGUAC-CGCUGCU--------UGCGGCuGaugc -5'
21379 5' -55.6 NC_004812.1 + 1454 0.79 0.3282
Target:  5'- gGGCCGggcacGGCGGCG-ACGCCGGCguccucgGCGg -3'
miRNA:   3'- -CCGGUa----CCGCUGCuUGCGGCUGa------UGC- -5'
21379 5' -55.6 NC_004812.1 + 1489 0.69 0.842983
Target:  5'- gGGC---GGCGGCgGAGCGCCGGCcgGCc -3'
miRNA:   3'- -CCGguaCCGCUG-CUUGCGGCUGa-UGc -5'
21379 5' -55.6 NC_004812.1 + 2005 0.66 0.943462
Target:  5'- cGCC--GGCGGuCGcucggGGCGCCGACgccgGCGg -3'
miRNA:   3'- cCGGuaCCGCU-GC-----UUGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 2462 0.72 0.686769
Target:  5'- cGCCGcGGCGGaaguccgGGGCGCCGGCgGCGg -3'
miRNA:   3'- cCGGUaCCGCUg------CUUGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 2495 0.66 0.947808
Target:  5'- cGGCCucgcgGGCgGGCGAGuCGgCGGC-GCGg -3'
miRNA:   3'- -CCGGua---CCG-CUGCUU-GCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 2743 0.68 0.873353
Target:  5'- aGGUCGcgcgcGGCGggccaGCGGACGUCGcACUGCGc -3'
miRNA:   3'- -CCGGUa----CCGC-----UGCUUGCGGC-UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 2884 0.72 0.676764
Target:  5'- cGGCCGgcggcGGCGGCGAGCagGCCGAgguaCUcgACGg -3'
miRNA:   3'- -CCGGUa----CCGCUGCUUG--CGGCU----GA--UGC- -5'
21379 5' -55.6 NC_004812.1 + 3257 0.67 0.906562
Target:  5'- gGGCUcgGGCGGgcCGcAGCGCgCGGCgaGCGa -3'
miRNA:   3'- -CCGGuaCCGCU--GC-UUGCG-GCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 3352 0.66 0.947808
Target:  5'- cGGUCAgcucGGCGACGAcGCGCgGGgcGCa -3'
miRNA:   3'- -CCGGUa---CCGCUGCU-UGCGgCUgaUGc -5'
21379 5' -55.6 NC_004812.1 + 3385 0.75 0.51704
Target:  5'- aGGCCucgagGGCGGCGGcggaggGCGCCGGCgugugGCu -3'
miRNA:   3'- -CCGGua---CCGCUGCU------UGCGGCUGa----UGc -5'
21379 5' -55.6 NC_004812.1 + 3497 0.66 0.92377
Target:  5'- gGGCCGcgGGCG-CGGGCccgggGCCGGCgGCc -3'
miRNA:   3'- -CCGGUa-CCGCuGCUUG-----CGGCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 3538 0.71 0.700701
Target:  5'- gGGCCGcGGCGcCGGgccggcucuucuugcGCGCCGGCgggcagGCGg -3'
miRNA:   3'- -CCGGUaCCGCuGCU---------------UGCGGCUGa-----UGC- -5'
21379 5' -55.6 NC_004812.1 + 3583 0.7 0.782952
Target:  5'- nGGCgGcGGCGGCGGgcgggcGCGCCGGCg--- -3'
miRNA:   3'- -CCGgUaCCGCUGCU------UGCGGCUGaugc -5'
21379 5' -55.6 NC_004812.1 + 3632 0.66 0.934081
Target:  5'- cGCCGgcgGGCGcGCG-GCGCCGcccgcguCUGCGu -3'
miRNA:   3'- cCGGUa--CCGC-UGCuUGCGGCu------GAUGC- -5'
21379 5' -55.6 NC_004812.1 + 3705 0.73 0.586077
Target:  5'- aGGUCGgcGGCGGCG-GCGCCGGCggaGCGc -3'
miRNA:   3'- -CCGGUa-CCGCUGCuUGCGGCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 3752 0.71 0.706639
Target:  5'- cGCCAgcaGCGGCGcggcGGCGCCGGCgACGa -3'
miRNA:   3'- cCGGUac-CGCUGC----UUGCGGCUGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.