miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 34705 0.74 0.536483
Target:  5'- aGCCA-GGCGACGAGCGCCucgUACa -3'
miRNA:   3'- cCGGUaCCGCUGCUUGCGGcugAUGc -5'
21379 5' -55.6 NC_004812.1 + 42570 0.76 0.460582
Target:  5'- uGGCCGUcggGaGCGACGcgcGCGCCGACgGCGa -3'
miRNA:   3'- -CCGGUA---C-CGCUGCu--UGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 94287 0.76 0.469773
Target:  5'- cGGCCcgGGCGugcgccuggguGCGcuugguCGCCGGCUGCGc -3'
miRNA:   3'- -CCGGuaCCGC-----------UGCuu----GCGGCUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 149013 0.75 0.507425
Target:  5'- gGGCCggGcGCGGCG-GCGCCGGCUuuaugccgGCGg -3'
miRNA:   3'- -CCGGuaC-CGCUGCuUGCGGCUGA--------UGC- -5'
21379 5' -55.6 NC_004812.1 + 30699 0.75 0.514148
Target:  5'- cGCCAcacgaagauggaguUGGCGACGGACGCC-ACgGCGu -3'
miRNA:   3'- cCGGU--------------ACCGCUGCUUGCGGcUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 128893 0.75 0.51704
Target:  5'- aGGCCucgagGGCGGCGGcggaggGCGCCGGCgugugGCu -3'
miRNA:   3'- -CCGGua---CCGCUGCU------UGCGGCUGa----UGc -5'
21379 5' -55.6 NC_004812.1 + 130465 0.75 0.51704
Target:  5'- cGGCCGgcgGGCGGCcGGCGgCGGCgagGCGg -3'
miRNA:   3'- -CCGGUa--CCGCUGcUUGCgGCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 104835 0.75 0.523815
Target:  5'- cGCCGcGGCGGCGGucuggcucuuggccGCGCCGGCggccGCGg -3'
miRNA:   3'- cCGGUaCCGCUGCU--------------UGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 32999 0.75 0.526728
Target:  5'- cGGCCGgcguucgcgGGCGAcCGGGCGCgCGugUGCu -3'
miRNA:   3'- -CCGGUa--------CCGCU-GCUUGCG-GCugAUGc -5'
21379 5' -55.6 NC_004812.1 + 129737 0.76 0.451487
Target:  5'- gGGCCGggGGCGGCGGcgGCGgCGGCgGCGg -3'
miRNA:   3'- -CCGGUa-CCGCUGCU--UGCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 135788 0.76 0.433599
Target:  5'- cGGUCAcgcggaUGGUGACGAggcggGCGCCGACgcggGCGc -3'
miRNA:   3'- -CCGGU------ACCGCUGCU-----UGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 48334 0.77 0.407557
Target:  5'- aGGCCGcaacGGCGGCGGACGCCGcCgaggGCu -3'
miRNA:   3'- -CCGGUa---CCGCUGCUUGCGGCuGa---UGc -5'
21379 5' -55.6 NC_004812.1 + 130404 0.79 0.306731
Target:  5'- cGGCCAcGGCGGCGcgcgcGCGCCGccgcucGCUGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCu----UGCGGC------UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 129863 0.79 0.313766
Target:  5'- cGGCuCAUGGCGACGGcgGCGgCGGCgUGCGc -3'
miRNA:   3'- -CCG-GUACCGCUGCU--UGCgGCUG-AUGC- -5'
21379 5' -55.6 NC_004812.1 + 126962 0.79 0.3282
Target:  5'- gGGCCGggcacGGCGGCG-ACGCCGGCguccucgGCGg -3'
miRNA:   3'- -CCGGUa----CCGCUGCuUGCGGCUGa------UGC- -5'
21379 5' -55.6 NC_004812.1 + 39033 0.78 0.343119
Target:  5'- gGGCgGUGGUGACGAgcACGCCGuCgACGg -3'
miRNA:   3'- -CCGgUACCGCUGCU--UGCGGCuGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 108519 0.78 0.35076
Target:  5'- gGGCgCAcGGCGGCGGcCGCCGAgUACGc -3'
miRNA:   3'- -CCG-GUaCCGCUGCUuGCGGCUgAUGC- -5'
21379 5' -55.6 NC_004812.1 + 90813 0.78 0.357739
Target:  5'- cGGCC-UGGCGGCGucguggagcacguGGCGCCGGCgccgGCGc -3'
miRNA:   3'- -CCGGuACCGCUGC-------------UUGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 71903 0.78 0.366401
Target:  5'- gGGCCG-GGCGGCGcGGCGCCGcgggcGCUGCa -3'
miRNA:   3'- -CCGGUaCCGCUGC-UUGCGGC-----UGAUGc -5'
21379 5' -55.6 NC_004812.1 + 32113 0.77 0.407557
Target:  5'- gGGCCAUGGCGcccugGCGGAgGCCgGACgccACGg -3'
miRNA:   3'- -CCGGUACCGC-----UGCUUgCGG-CUGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.