miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 144200 1.12 0.00261
Target:  5'- uGGCCAUGGCGACGAACGCCGACUACGg -3'
miRNA:   3'- -CCGGUACCGCUGCUUGCGGCUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 21089 0.82 0.210287
Target:  5'- cGGCCGaGGCGGCGAagACGCCGACa--- -3'
miRNA:   3'- -CCGGUaCCGCUGCU--UGCGGCUGaugc -5'
21379 5' -55.6 NC_004812.1 + 15958 0.81 0.237255
Target:  5'- cGGCCG-GGCGACGGACGCCccgcGGCcgGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCUUGCGG----CUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 20594 0.8 0.279803
Target:  5'- cGGCCgGUGGCGAgGAcgcGCGCCugcGACUGCGu -3'
miRNA:   3'- -CCGG-UACCGCUgCU---UGCGG---CUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 4896 0.79 0.306731
Target:  5'- cGGCCAcGGCGGCGcgcgcGCGCCGccgcucGCUGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCu----UGCGGC------UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 130404 0.79 0.306731
Target:  5'- cGGCCAcGGCGGCGcgcgcGCGCCGccgcucGCUGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCu----UGCGGC------UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 4355 0.79 0.313766
Target:  5'- cGGCuCAUGGCGACGGcgGCGgCGGCgUGCGc -3'
miRNA:   3'- -CCG-GUACCGCUGCU--UGCgGCUG-AUGC- -5'
21379 5' -55.6 NC_004812.1 + 129863 0.79 0.313766
Target:  5'- cGGCuCAUGGCGACGGcgGCGgCGGCgUGCGc -3'
miRNA:   3'- -CCG-GUACCGCUGCU--UGCgGCUG-AUGC- -5'
21379 5' -55.6 NC_004812.1 + 126962 0.79 0.3282
Target:  5'- gGGCCGggcacGGCGGCG-ACGCCGGCguccucgGCGg -3'
miRNA:   3'- -CCGGUa----CCGCUGCuUGCGGCUGa------UGC- -5'
21379 5' -55.6 NC_004812.1 + 1454 0.79 0.3282
Target:  5'- gGGCCGggcacGGCGGCG-ACGCCGGCguccucgGCGg -3'
miRNA:   3'- -CCGGUa----CCGCUGCuUGCGGCUGa------UGC- -5'
21379 5' -55.6 NC_004812.1 + 39033 0.78 0.343119
Target:  5'- gGGCgGUGGUGACGAgcACGCCGuCgACGg -3'
miRNA:   3'- -CCGgUACCGCUGCU--UGCGGCuGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 108519 0.78 0.35076
Target:  5'- gGGCgCAcGGCGGCGGcCGCCGAgUACGc -3'
miRNA:   3'- -CCG-GUaCCGCUGCUuGCGGCUgAUGC- -5'
21379 5' -55.6 NC_004812.1 + 90813 0.78 0.357739
Target:  5'- cGGCC-UGGCGGCGucguggagcacguGGCGCCGGCgccgGCGc -3'
miRNA:   3'- -CCGGuACCGCUGC-------------UUGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 82074 0.78 0.358521
Target:  5'- uGCCGUGGgaGAUGAACGCCGACg--- -3'
miRNA:   3'- cCGGUACCg-CUGCUUGCGGCUGaugc -5'
21379 5' -55.6 NC_004812.1 + 71903 0.78 0.366401
Target:  5'- gGGCCG-GGCGGCGcGGCGCCGcgggcGCUGCa -3'
miRNA:   3'- -CCGGUaCCGCUGC-UUGCGGC-----UGAUGc -5'
21379 5' -55.6 NC_004812.1 + 65604 0.78 0.366401
Target:  5'- aGGCCGacGGCGACu-GCGCCGACgACGa -3'
miRNA:   3'- -CCGGUa-CCGCUGcuUGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 95551 0.78 0.3744
Target:  5'- uGCCcgGaGCGGCG-ACGCCGACgugGCGg -3'
miRNA:   3'- cCGGuaC-CGCUGCuUGCGGCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 52832 0.77 0.382516
Target:  5'- uGGCCuggGGCGACGGccacACGCCcGACcGCGg -3'
miRNA:   3'- -CCGGua-CCGCUGCU----UGCGG-CUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 143682 0.77 0.399096
Target:  5'- gGGCUcgGGCGACGGACGCgGAgUuucCGg -3'
miRNA:   3'- -CCGGuaCCGCUGCUUGCGgCUgAu--GC- -5'
21379 5' -55.6 NC_004812.1 + 48334 0.77 0.407557
Target:  5'- aGGCCGcaacGGCGGCGGACGCCGcCgaggGCu -3'
miRNA:   3'- -CCGGUa---CCGCUGCUUGCGGCuGa---UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.