miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 109605 0.66 0.929042
Target:  5'- uGGCCAUGGCGccccgggggcagGCGuucgcagcccuGGCGCgCGACgACu -3'
miRNA:   3'- -CCGGUACCGC------------UGC-----------UUGCG-GCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 129005 0.66 0.92377
Target:  5'- gGGCCGcgGGCG-CGGGCccgggGCCGGCgGCc -3'
miRNA:   3'- -CCGGUa-CCGCuGCUUG-----CGGCUGaUGc -5'
21379 5' -55.6 NC_004812.1 + 125356 0.66 0.922144
Target:  5'- nGGCCGagagugagGGUGGCGAGCGCguggacgcaccuccCGACgUGCu -3'
miRNA:   3'- -CCGGUa-------CCGCUGCUUGCG--------------GCUG-AUGc -5'
21379 5' -55.6 NC_004812.1 + 108385 0.66 0.929042
Target:  5'- aGGCCcugGGCcGCGGggcuccgcucGCGCCGGCgcACGu -3'
miRNA:   3'- -CCGGua-CCGcUGCU----------UGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 23484 0.66 0.929042
Target:  5'- uGGCgGUGGuCGAgGGGCuGCUGucgcACUACGu -3'
miRNA:   3'- -CCGgUACC-GCUgCUUG-CGGC----UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 82750 0.66 0.947808
Target:  5'- cGCCcUGaccGCGACG-ACGCUGACgcGCGa -3'
miRNA:   3'- cCGGuAC---CGCUGCuUGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 87324 0.66 0.928525
Target:  5'- gGGCC-UGGagcgcggccCGACGAugcggcucauggaGCGCgGGCUGCa -3'
miRNA:   3'- -CCGGuACC---------GCUGCU-------------UGCGgCUGAUGc -5'
21379 5' -55.6 NC_004812.1 + 71856 0.66 0.92377
Target:  5'- cGGCCcgGGgGAUGGGgGUCGGCc--- -3'
miRNA:   3'- -CCGGuaCCgCUGCUUgCGGCUGaugc -5'
21379 5' -55.6 NC_004812.1 + 135610 0.66 0.929042
Target:  5'- cGGCCGaGGCG-CG-GCGgCGACgACGu -3'
miRNA:   3'- -CCGGUaCCGCuGCuUGCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 55939 0.66 0.929042
Target:  5'- uGGCC-UGGCccccGACGAggagcGCGUCGACcAUGu -3'
miRNA:   3'- -CCGGuACCG----CUGCU-----UGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 101297 0.66 0.92377
Target:  5'- cGCCcgGGCGuCGGcccGCGCCGAg---- -3'
miRNA:   3'- cCGGuaCCGCuGCU---UGCGGCUgaugc -5'
21379 5' -55.6 NC_004812.1 + 73874 0.66 0.92377
Target:  5'- cGGUCAgGGCGGCGuacagcuCGgCGGCcGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCuu-----GCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 85615 0.66 0.929042
Target:  5'- cGGCCcUGGCGGcCGAccCGCgGGCcccGCGg -3'
miRNA:   3'- -CCGGuACCGCU-GCUu-GCGgCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 39396 0.66 0.92377
Target:  5'- uGGCCcgcagcUGGCGGUGcgUGCCGAC-GCGg -3'
miRNA:   3'- -CCGGu-----ACCGCUGCuuGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 152637 0.66 0.928525
Target:  5'- gGGCUAcGGCGGCGAccuggcCGCCGugcccggGCUgGCGg -3'
miRNA:   3'- -CCGGUaCCGCUGCUu-----GCGGC-------UGA-UGC- -5'
21379 5' -55.6 NC_004812.1 + 76257 0.66 0.929042
Target:  5'- cGGCCA-GGCccGCGcGCGCCGcCUcgACGg -3'
miRNA:   3'- -CCGGUaCCGc-UGCuUGCGGCuGA--UGC- -5'
21379 5' -55.6 NC_004812.1 + 21740 0.66 0.929042
Target:  5'- cGCCccacGUGGUGACGu-CGCCGG--GCGg -3'
miRNA:   3'- cCGG----UACCGCUGCuuGCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 134970 0.66 0.92323
Target:  5'- cGUCGUGGCGGacaccagcucggcCGAGCGCCGcCggGCc -3'
miRNA:   3'- cCGGUACCGCU-------------GCUUGCGGCuGa-UGc -5'
21379 5' -55.6 NC_004812.1 + 109317 0.66 0.92377
Target:  5'- cGCC--GGCGGCGcuggaggcGGCGCCGcGCUACc -3'
miRNA:   3'- cCGGuaCCGCUGC--------UUGCGGC-UGAUGc -5'
21379 5' -55.6 NC_004812.1 + 117611 0.66 0.92377
Target:  5'- gGGCCGggggagggggGGCGGCGcgggcCGCCGGgcGCGg -3'
miRNA:   3'- -CCGGUa---------CCGCUGCuu---GCGGCUgaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.