miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 156257 0.66 0.922144
Target:  5'- nGGCCGagagugagGGUGGCGAGCGCguggacgcaccuccCGACgUGCu -3'
miRNA:   3'- -CCGGUa-------CCGCUGCUUGCG--------------GCUG-AUGc -5'
21379 5' -55.6 NC_004812.1 + 156228 0.69 0.826654
Target:  5'- gGGCgG-GGCGccGCGGgauGCGCCGGCgGCGg -3'
miRNA:   3'- -CCGgUaCCGC--UGCU---UGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 156166 0.69 0.826654
Target:  5'- cGGCCcgGGCucgcGGCGGGCGCgcgCGAgaGCGc -3'
miRNA:   3'- -CCGGuaCCG----CUGCUUGCG---GCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 156120 0.7 0.76449
Target:  5'- gGGCCGggagaaggGGUGACGGgccGCGCgGAC-GCGg -3'
miRNA:   3'- -CCGGUa-------CCGCUGCU---UGCGgCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 156086 0.71 0.726262
Target:  5'- gGGCCcgGGCGcGCGGGCccgccCCGGCcGCGg -3'
miRNA:   3'- -CCGGuaCCGC-UGCUUGc----GGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 155930 0.68 0.858566
Target:  5'- aGGCCG-GGCcGCGGgaGCGCCgGGgUGCGa -3'
miRNA:   3'- -CCGGUaCCGcUGCU--UGCGG-CUgAUGC- -5'
21379 5' -55.6 NC_004812.1 + 155890 0.68 0.866062
Target:  5'- cGCC--GGCGACcgcgccGGCGCCGACgccgACGg -3'
miRNA:   3'- cCGGuaCCGCUGc-----UUGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 155810 0.68 0.873353
Target:  5'- cGGCCGggcGGCGGCGGggGCGgCGGCc--- -3'
miRNA:   3'- -CCGGUa--CCGCUGCU--UGCgGCUGaugc -5'
21379 5' -55.6 NC_004812.1 + 155413 0.74 0.565104
Target:  5'- gGGCCgggcgugGUGGCGGCGGcgACGgCGACgGCGa -3'
miRNA:   3'- -CCGG-------UACCGCUGCU--UGCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 155381 0.67 0.893943
Target:  5'- cGCCcgGGCGGgGAggagcccccgcgGCGCCGcccccggccgaGCUACa -3'
miRNA:   3'- cCGGuaCCGCUgCU------------UGCGGC-----------UGAUGc -5'
21379 5' -55.6 NC_004812.1 + 155254 0.66 0.938887
Target:  5'- gGGCCGaggggggGcGCGGCGGACGCCaaaccggggaggGGCgggGCGc -3'
miRNA:   3'- -CCGGUa------C-CGCUGCUUGCGG------------CUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 155207 0.68 0.858566
Target:  5'- cGCgAUGGCGGCGAGaggggGCgCGGCgcgggGCGg -3'
miRNA:   3'- cCGgUACCGCUGCUUg----CG-GCUGa----UGC- -5'
21379 5' -55.6 NC_004812.1 + 154405 0.74 0.566099
Target:  5'- gGGCCGcGGCGACacgcugcuCGCCGACgACGa -3'
miRNA:   3'- -CCGGUaCCGCUGcuu-----GCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 154341 0.7 0.755083
Target:  5'- cGCuCGUGcuGCGcGCGGACGCCGAC-GCGg -3'
miRNA:   3'- cCG-GUAC--CGC-UGCUUGCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 154022 0.71 0.726262
Target:  5'- uGCCGUcGGCGGCGGcgGCGUCGGagGCGg -3'
miRNA:   3'- cCGGUA-CCGCUGCU--UGCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 153335 0.68 0.858566
Target:  5'- gGGCCcgGGCGGCGucuccucgGGCGgCGGggGCGc -3'
miRNA:   3'- -CCGGuaCCGCUGC--------UUGCgGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 153120 0.66 0.947808
Target:  5'- cGCCccGGgGGCGGGCGCggggGGCUcgGCGg -3'
miRNA:   3'- cCGGuaCCgCUGCUUGCGg---CUGA--UGC- -5'
21379 5' -55.6 NC_004812.1 + 152915 0.67 0.900366
Target:  5'- gGGCgCcgGGCGGgacuUGGGCGCCgggcggGACUugGg -3'
miRNA:   3'- -CCG-GuaCCGCU----GCUUGCGG------CUGAugC- -5'
21379 5' -55.6 NC_004812.1 + 152750 0.69 0.809635
Target:  5'- gGGCCGcGGCGGCc-GCGgCGACcACGg -3'
miRNA:   3'- -CCGGUaCCGCUGcuUGCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 152640 0.66 0.947808
Target:  5'- gGGCCGgcgcGCGGCGGggggGCGCCGGgcCUcCGg -3'
miRNA:   3'- -CCGGUac--CGCUGCU----UGCGGCU--GAuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.