miRNA display CGI


Results 41 - 60 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 95879 0.66 0.943462
Target:  5'- gGGCCGaGGgGGCGGGCcCCGAUgccCGc -3'
miRNA:   3'- -CCGGUaCCgCUGCUUGcGGCUGau-GC- -5'
21379 5' -55.6 NC_004812.1 + 99779 0.66 0.943462
Target:  5'- aGGCUcucGGgGACGGaguugugcggcGCGCCGccaGCUGCGc -3'
miRNA:   3'- -CCGGua-CCgCUGCU-----------UGCGGC---UGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 77033 0.66 0.943462
Target:  5'- uGGCCucuAUGGCG-CGcacGCGCgCGGCgagGCGc -3'
miRNA:   3'- -CCGG---UACCGCuGCu--UGCG-GCUGa--UGC- -5'
21379 5' -55.6 NC_004812.1 + 45070 0.66 0.943462
Target:  5'- cGGCCGggccGGCGucCGGGggaaaGCCGGCcgGCGg -3'
miRNA:   3'- -CCGGUa---CCGCu-GCUUg----CGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 74353 0.66 0.943462
Target:  5'- aGCaggGGCG-CGGGCGCgGGCgGCGg -3'
miRNA:   3'- cCGguaCCGCuGCUUGCGgCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 105160 0.66 0.943462
Target:  5'- uGGCCGUaGCGccccgccuGCGAGCGgCCGcgugcCUGCGa -3'
miRNA:   3'- -CCGGUAcCGC--------UGCUUGC-GGCu----GAUGC- -5'
21379 5' -55.6 NC_004812.1 + 148085 0.66 0.943462
Target:  5'- aGGCCGauUGGC--CGGAuCGCCGGggGCGg -3'
miRNA:   3'- -CCGGU--ACCGcuGCUU-GCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 115413 0.66 0.943462
Target:  5'- cGCCccGcGCGGC--GCGCCGACcgGCGc -3'
miRNA:   3'- cCGGuaC-CGCUGcuUGCGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 139110 0.66 0.943462
Target:  5'- gGGCgCGUcGGCGACGuccgggAGCGCC-ACcGCGg -3'
miRNA:   3'- -CCG-GUA-CCGCUGC------UUGCGGcUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 33777 0.66 0.943462
Target:  5'- gGGCUcggcGGcCGACGAcauCGCCcGCUGCGc -3'
miRNA:   3'- -CCGGua--CC-GCUGCUu--GCGGcUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 129301 0.66 0.943462
Target:  5'- cGCgCAcGGCGGCGAcggcggccucgGCGCCGcCgGCGa -3'
miRNA:   3'- cCG-GUaCCGCUGCU-----------UGCGGCuGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 91167 0.66 0.943462
Target:  5'- gGGCCggGGgGACcccuccccgagGGACGCgGGCU-CGg -3'
miRNA:   3'- -CCGGuaCCgCUG-----------CUUGCGgCUGAuGC- -5'
21379 5' -55.6 NC_004812.1 + 127514 0.66 0.943462
Target:  5'- cGCC--GGCGGuCGcucggGGCGCCGACgccgGCGg -3'
miRNA:   3'- cCGGuaCCGCU-GC-----UUGCGGCUGa---UGC- -5'
21379 5' -55.6 NC_004812.1 + 36905 0.66 0.943015
Target:  5'- cGCCGgggGGCGAgGGgaaggggACGCgggcagCGACUGCGc -3'
miRNA:   3'- cCGGUa--CCGCUgCU-------UGCG------GCUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 83844 0.66 0.943015
Target:  5'- cGGCCGUcuccggggggagcGGCGGgGGGCGgCG-CUGCc -3'
miRNA:   3'- -CCGGUA-------------CCGCUgCUUGCgGCuGAUGc -5'
21379 5' -55.6 NC_004812.1 + 69019 0.66 0.940745
Target:  5'- gGGCCGgcgGGUccccaggcccagcauGGCGGGCGUCGAggGCa -3'
miRNA:   3'- -CCGGUa--CCG---------------CUGCUUGCGGCUgaUGc -5'
21379 5' -55.6 NC_004812.1 + 33531 0.66 0.938887
Target:  5'- gGGCCAgaGCcGCGAG-GCCGACgACGa -3'
miRNA:   3'- -CCGGUacCGcUGCUUgCGGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 71955 0.66 0.938887
Target:  5'- cGGCCcUGccGCGACGcGCGCCGcgggagGCUcACGc -3'
miRNA:   3'- -CCGGuAC--CGCUGCuUGCGGC------UGA-UGC- -5'
21379 5' -55.6 NC_004812.1 + 46989 0.66 0.938887
Target:  5'- cGCCAgGGCuGCGAACGCCuGCccccgggGCGc -3'
miRNA:   3'- cCGGUaCCGcUGCUUGCGGcUGa------UGC- -5'
21379 5' -55.6 NC_004812.1 + 81427 0.66 0.938887
Target:  5'- cGGCCAUGGCGucCGGG-GCCcagGGCcccagGCGa -3'
miRNA:   3'- -CCGGUACCGCu-GCUUgCGG---CUGa----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.