miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21379 5' -55.6 NC_004812.1 + 98768 0.66 0.947808
Target:  5'- cGCgGcGGCGGCGAGugggcCGCCGAg-GCGg -3'
miRNA:   3'- cCGgUaCCGCUGCUU-----GCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 68760 0.66 0.947808
Target:  5'- cGCCGUcGuGCG-CGcACGCCGAgCUGCu -3'
miRNA:   3'- cCGGUA-C-CGCuGCuUGCGGCU-GAUGc -5'
21379 5' -55.6 NC_004812.1 + 128003 0.66 0.947808
Target:  5'- cGGCCucgcgGGCgGGCGAGuCGgCGGC-GCGg -3'
miRNA:   3'- -CCGGua---CCG-CUGCUU-GCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 153120 0.66 0.947808
Target:  5'- cGCCccGGgGGCGGGCGCggggGGCUcgGCGg -3'
miRNA:   3'- cCGGuaCCgCUGCUUGCGg---CUGA--UGC- -5'
21379 5' -55.6 NC_004812.1 + 139704 0.66 0.947384
Target:  5'- aGGCCAugcgcagcagcccUGGUGGCuGAugGCCucGGCcACGc -3'
miRNA:   3'- -CCGGU-------------ACCGCUG-CUugCGG--CUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 77868 0.66 0.947384
Target:  5'- cGGUCuucGGCGGCGGcccggaccuccucGCGCCGG--GCGa -3'
miRNA:   3'- -CCGGua-CCGCUGCU-------------UGCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 94621 0.66 0.947384
Target:  5'- cGGCCccugGGCgcggagaGACGGGCGCgGGCgccucucugGCGg -3'
miRNA:   3'- -CCGGua--CCG-------CUGCUUGCGgCUGa--------UGC- -5'
21379 5' -55.6 NC_004812.1 + 79784 0.66 0.946528
Target:  5'- aGGCCGUGGgGGuCGAAgagguacgccucguCGCCGuc-GCGg -3'
miRNA:   3'- -CCGGUACCgCU-GCUU--------------GCGGCugaUGC- -5'
21379 5' -55.6 NC_004812.1 + 137799 0.66 0.943462
Target:  5'- uGGCg--GGCGGCGAggGCGCCG-CggaGCa -3'
miRNA:   3'- -CCGguaCCGCUGCU--UGCGGCuGa--UGc -5'
21379 5' -55.6 NC_004812.1 + 3793 0.66 0.943462
Target:  5'- cGCgCAcGGCGGCGAcggcggccucgGCGCCGcCgGCGa -3'
miRNA:   3'- cCG-GUaCCGCUGCU-----------UGCGGCuGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 136034 0.66 0.943462
Target:  5'- gGGCCAUcGGCGagGCGGaccacGCGCUGAUg--- -3'
miRNA:   3'- -CCGGUA-CCGC--UGCU-----UGCGGCUGaugc -5'
21379 5' -55.6 NC_004812.1 + 12915 0.66 0.943462
Target:  5'- gGGCg--GcGCGGCGAGCGCuCGAgcGCGa -3'
miRNA:   3'- -CCGguaC-CGCUGCUUGCG-GCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 33777 0.66 0.943462
Target:  5'- gGGCUcggcGGcCGACGAcauCGCCcGCUGCGc -3'
miRNA:   3'- -CCGGua--CC-GCUGCUu--GCGGcUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 85332 0.66 0.943462
Target:  5'- cGCC-UGGCGGCGAcuuuCGgCGGC-GCGc -3'
miRNA:   3'- cCGGuACCGCUGCUu---GCgGCUGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 148085 0.66 0.943462
Target:  5'- aGGCCGauUGGC--CGGAuCGCCGGggGCGg -3'
miRNA:   3'- -CCGGU--ACCGcuGCUU-GCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 39336 0.66 0.943462
Target:  5'- cGGCCGUGccGCGcuCGAACGCCcccaGC-ACGg -3'
miRNA:   3'- -CCGGUAC--CGCu-GCUUGCGGc---UGaUGC- -5'
21379 5' -55.6 NC_004812.1 + 45070 0.66 0.943462
Target:  5'- cGGCCGggccGGCGucCGGGggaaaGCCGGCcgGCGg -3'
miRNA:   3'- -CCGGUa---CCGCu-GCUUg----CGGCUGa-UGC- -5'
21379 5' -55.6 NC_004812.1 + 83226 0.66 0.943462
Target:  5'- gGGCCucgGUGGCcccCGGGCGCUGGugGCGg -3'
miRNA:   3'- -CCGG---UACCGcu-GCUUGCGGCUgaUGC- -5'
21379 5' -55.6 NC_004812.1 + 86375 0.66 0.943462
Target:  5'- cGCUGggugGGCGGaagaGggUGgCGGCUGCGg -3'
miRNA:   3'- cCGGUa---CCGCUg---CuuGCgGCUGAUGC- -5'
21379 5' -55.6 NC_004812.1 + 74353 0.66 0.943462
Target:  5'- aGCaggGGCG-CGGGCGCgGGCgGCGg -3'
miRNA:   3'- cCGguaCCGCuGCUUGCGgCUGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.