miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 147983 0.66 0.888555
Target:  5'- -cGUGcucaUGGCGCcGGGCGGCGgGGCCg -3'
miRNA:   3'- acCACc---ACCGCGcCUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 140882 0.66 0.8951
Target:  5'- cGGgGGUGGgugGCGGGACGcGCGggGGCa -3'
miRNA:   3'- aCCaCCACCg--CGCCUUGC-UGCa-CUGg -5'
21380 3' -57.2 NC_004812.1 + 113150 0.66 0.881793
Target:  5'- aGGcuccGG-GGCGCGaGGGuCGGCGgagGGCCg -3'
miRNA:   3'- aCCa---CCaCCGCGC-CUU-GCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 23622 0.66 0.901426
Target:  5'- -aGUGGccgGGCGCccagacGGGCGuccGCGUGACCc -3'
miRNA:   3'- acCACCa--CCGCGc-----CUUGC---UGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 124728 0.66 0.888555
Target:  5'- gGGUGGgaGGCGCuGGcCGGgGgGACCg -3'
miRNA:   3'- aCCACCa-CCGCGcCUuGCUgCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 113744 0.66 0.888555
Target:  5'- aGGUGcGcGGCGaGGAgcGCGGCcagguaGUGGCCa -3'
miRNA:   3'- aCCAC-CaCCGCgCCU--UGCUG------CACUGG- -5'
21380 3' -57.2 NC_004812.1 + 94697 0.66 0.903894
Target:  5'- gGGUGG-GGCGaGGucuugguugccuagcAACGACG-GAUCa -3'
miRNA:   3'- aCCACCaCCGCgCC---------------UUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 81986 0.66 0.867638
Target:  5'- cGGgcgGG-GGcCGUcgaGGAGCugGGCGUGGCCg -3'
miRNA:   3'- aCCa--CCaCC-GCG---CCUUG--CUGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 71936 0.66 0.881793
Target:  5'- cGGcgaGGacGGCGCGGGGCGGCccuGCCg -3'
miRNA:   3'- aCCa--CCa-CCGCGCCUUGCUGcacUGG- -5'
21380 3' -57.2 NC_004812.1 + 106207 0.66 0.888555
Target:  5'- cGGgcgccaGGUGGCGgaagGGGGCGACGgcGGCg -3'
miRNA:   3'- aCCa-----CCACCGCg---CCUUGCUGCa-CUGg -5'
21380 3' -57.2 NC_004812.1 + 129029 0.66 0.888555
Target:  5'- cGGcGGccccgGGgGCGGGgccGCGGCGccgGGCCg -3'
miRNA:   3'- aCCaCCa----CCgCGCCU---UGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 129148 0.67 0.828808
Target:  5'- cGG-GGcGGCGCuGAACGuGCGcGGCCu -3'
miRNA:   3'- aCCaCCaCCGCGcCUUGC-UGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 143929 0.67 0.8449
Target:  5'- gGGUGGguuGCGUGGGAgGugGgGGCg -3'
miRNA:   3'- aCCACCac-CGCGCCUUgCugCaCUGg -5'
21380 3' -57.2 NC_004812.1 + 122419 0.67 0.8449
Target:  5'- gGGUGGacGCGCGGugggcccgGGCGGCGUcuCCu -3'
miRNA:   3'- aCCACCacCGCGCC--------UUGCUGCAcuGG- -5'
21380 3' -57.2 NC_004812.1 + 3196 0.67 0.836943
Target:  5'- aGGcGGcGGCGCGGcGCaGCG-GGCCc -3'
miRNA:   3'- aCCaCCaCCGCGCCuUGcUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 130972 0.67 0.842532
Target:  5'- aUGGaGGccagcagggccagcUGGCGCGGGgacacggcgGCGGCGgcGGCCg -3'
miRNA:   3'- -ACCaCC--------------ACCGCGCCU---------UGCUGCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 145045 0.67 0.836943
Target:  5'- ---cGGaGGCG-GGGGCGGCGgcgGACCu -3'
miRNA:   3'- accaCCaCCGCgCCUUGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 141456 0.67 0.836943
Target:  5'- cGGUccaGGUcGUGCGGGgagcccccgagGCGACGcGGCCg -3'
miRNA:   3'- aCCA---CCAcCGCGCCU-----------UGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 35521 0.67 0.836943
Target:  5'- gGGUGGcccuuaGGgGCGGGGgGGCGgGACg -3'
miRNA:   3'- aCCACCa-----CCgCGCCUUgCUGCaCUGg -5'
21380 3' -57.2 NC_004812.1 + 124851 0.67 0.836943
Target:  5'- ---cGGUGGCGUGGGGCgGGCGccgcGCCc -3'
miRNA:   3'- accaCCACCGCGCCUUG-CUGCac--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.