Results 21 - 40 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 3' | -57.2 | NC_004812.1 | + | 46290 | 0.66 | 0.874819 |
Target: 5'- cGG-GGcGGC-CGGAggccGCGGCG-GGCCg -3' miRNA: 3'- aCCaCCaCCGcGCCU----UGCUGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 75238 | 0.66 | 0.901426 |
Target: 5'- cGGUGGccucGGCGCGcugcugcuUGGCGcgGACCa -3' miRNA: 3'- aCCACCa---CCGCGCcuu-----GCUGCa-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 57002 | 0.66 | 0.867638 |
Target: 5'- cGGUGGUGaGCGgGGGccuGCGGaucccCGaGGCCc -3' miRNA: 3'- aCCACCAC-CGCgCCU---UGCU-----GCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 48139 | 0.66 | 0.888555 |
Target: 5'- gGGUGGccguccucgaGGCGCGGcgccgGGCGGCG--GCCg -3' miRNA: 3'- aCCACCa---------CCGCGCC-----UUGCUGCacUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 9089 | 0.66 | 0.874819 |
Target: 5'- aGGcGGcGGCGCGaaGACGGCGccucggGGCCa -3' miRNA: 3'- aCCaCCaCCGCGCc-UUGCUGCa-----CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 101430 | 0.66 | 0.901426 |
Target: 5'- cGGUcGGUGaGCucGCGGAGCG-CGUccCCg -3' miRNA: 3'- aCCA-CCAC-CG--CGCCUUGCuGCAcuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 94697 | 0.66 | 0.903894 |
Target: 5'- gGGUGG-GGCGaGGucuugguugccuagcAACGACG-GAUCa -3' miRNA: 3'- aCCACCaCCGCgCC---------------UUGCUGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 129029 | 0.66 | 0.888555 |
Target: 5'- cGGcGGccccgGGgGCGGGgccGCGGCGccgGGCCg -3' miRNA: 3'- aCCaCCa----CCgCGCCU---UGCUGCa--CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 63669 | 0.66 | 0.867638 |
Target: 5'- gGGUaGcGGCGCGGAGCucCGUcGCCc -3' miRNA: 3'- aCCAcCaCCGCGCCUUGcuGCAcUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 148265 | 0.66 | 0.87411 |
Target: 5'- cGGUGGggcGGCcgcgcccggcagcGCGGcGGCGGCGccGGCCc -3' miRNA: 3'- aCCACCa--CCG-------------CGCC-UUGCUGCa-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 140882 | 0.66 | 0.8951 |
Target: 5'- cGGgGGUGGgugGCGGGACGcGCGggGGCa -3' miRNA: 3'- aCCaCCACCg--CGCCUUGC-UGCa-CUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 71309 | 0.66 | 0.874819 |
Target: 5'- cGGgcuuccGGUGuGCGCGGcuuCGugG-GGCCc -3' miRNA: 3'- aCCa-----CCAC-CGCGCCuu-GCugCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 147220 | 0.66 | 0.874819 |
Target: 5'- gGGcGuUGGC-CGGAAauagGGCGUGGCCg -3' miRNA: 3'- aCCaCcACCGcGCCUUg---CUGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 125712 | 0.66 | 0.867638 |
Target: 5'- gGGaGGUGccCGCGGGGCG-CGgGGCCg -3' miRNA: 3'- aCCaCCACc-GCGCCUUGCuGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 113150 | 0.66 | 0.881793 |
Target: 5'- aGGcuccGG-GGCGCGaGGGuCGGCGgagGGCCg -3' miRNA: 3'- aCCa---CCaCCGCGC-CUU-GCUGCa--CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 54761 | 0.66 | 0.867638 |
Target: 5'- gGGcGGUGGacacgGCGGcGCu-CGUGGCCg -3' miRNA: 3'- aCCaCCACCg----CGCCuUGcuGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 21713 | 0.66 | 0.874819 |
Target: 5'- cGGUGGUGuagaucaccaCGCGGuacucgccccACGugGUGACg -3' miRNA: 3'- aCCACCACc---------GCGCCu---------UGCugCACUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 81986 | 0.66 | 0.867638 |
Target: 5'- cGGgcgGG-GGcCGUcgaGGAGCugGGCGUGGCCg -3' miRNA: 3'- aCCa--CCaCC-GCG---CCUUG--CUGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 136542 | 0.66 | 0.8951 |
Target: 5'- cGcUGGcUGGCGCGc-GCGACGcggGGCCu -3' miRNA: 3'- aCcACC-ACCGCGCcuUGCUGCa--CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 37732 | 0.66 | 0.881793 |
Target: 5'- gGGUGGggGGCgGCGGcccucgcggucGGCGAgGcGGCCc -3' miRNA: 3'- aCCACCa-CCG-CGCC-----------UUGCUgCaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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