miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 13395 0.7 0.658905
Target:  5'- gGGUcGGgGGCGCGGcggggguGACGGCcggagggGUGGCCg -3'
miRNA:   3'- aCCA-CCaCCGCGCC-------UUGCUG-------CACUGG- -5'
21380 3' -57.2 NC_004812.1 + 13508 0.69 0.75821
Target:  5'- ------aGGCGCGGGgcccACGGCGUGACg -3'
miRNA:   3'- accaccaCCGCGCCU----UGCUGCACUGg -5'
21380 3' -57.2 NC_004812.1 + 14121 0.69 0.729746
Target:  5'- gUGcGUGGcgGGCGacucgacggGGAACGGCG-GACCc -3'
miRNA:   3'- -AC-CACCa-CCGCg--------CCUUGCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 15929 0.67 0.85036
Target:  5'- gGGUGG-GGuCGCGGGgucacGCGuagacguaggcggcGCGUGGCg -3'
miRNA:   3'- aCCACCaCC-GCGCCU-----UGC--------------UGCACUGg -5'
21380 3' -57.2 NC_004812.1 + 16125 0.67 0.8449
Target:  5'- uUGGUGGcgggggcccccgUGGUG-GGGGCGGcCGUG-CCg -3'
miRNA:   3'- -ACCACC------------ACCGCgCCUUGCU-GCACuGG- -5'
21380 3' -57.2 NC_004812.1 + 16189 0.7 0.660902
Target:  5'- cGGUGGUGGaguugGCGGcGGCGACGgUGGg- -3'
miRNA:   3'- aCCACCACCg----CGCC-UUGCUGC-ACUgg -5'
21380 3' -57.2 NC_004812.1 + 16543 0.68 0.823844
Target:  5'- aGGUGGgcagccgGGUGUaccgcacucgauguuGGGACGGCGaccgGGCCc -3'
miRNA:   3'- aCCACCa------CCGCG---------------CCUUGCUGCa---CUGG- -5'
21380 3' -57.2 NC_004812.1 + 16848 0.76 0.356333
Target:  5'- gGGUGGgaguccgGGCGggcccCGGGAcCGGCGUGGCCc -3'
miRNA:   3'- aCCACCa------CCGC-----GCCUU-GCUGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 17333 0.76 0.348675
Target:  5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3'
miRNA:   3'- -ACCACCaCCGCgCCUugCugCACUgg -5'
21380 3' -57.2 NC_004812.1 + 17369 0.76 0.348675
Target:  5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3'
miRNA:   3'- -ACCACCaCCGCgCCUugCugCACUgg -5'
21380 3' -57.2 NC_004812.1 + 17405 0.76 0.348675
Target:  5'- gUGGUGGgGGCGgGGGugGugGUGGg- -3'
miRNA:   3'- -ACCACCaCCGCgCCUugCugCACUgg -5'
21380 3' -57.2 NC_004812.1 + 17459 0.68 0.785714
Target:  5'- gUGGgGGUGGCGCucucGAccGCGGCGgauGCCg -3'
miRNA:   3'- -ACCaCCACCGCGc---CU--UGCUGCac-UGG- -5'
21380 3' -57.2 NC_004812.1 + 18016 0.68 0.812031
Target:  5'- aGGUGGUGcGCGCagucgauggggGGGAgGACGagcgGGCg -3'
miRNA:   3'- aCCACCAC-CGCG-----------CCUUgCUGCa---CUGg -5'
21380 3' -57.2 NC_004812.1 + 18453 0.7 0.700556
Target:  5'- ---cGGUGGCGCGGcggGGgGGCGcGGCCc -3'
miRNA:   3'- accaCCACCGCGCC---UUgCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 19156 0.66 0.867638
Target:  5'- cGG-GG-GGCGCGGcGGCGGCGcccCCa -3'
miRNA:   3'- aCCaCCaCCGCGCC-UUGCUGCacuGG- -5'
21380 3' -57.2 NC_004812.1 + 20754 0.68 0.820501
Target:  5'- ---gGGUGGU-CGGGGCGGC-UGACCu -3'
miRNA:   3'- accaCCACCGcGCCUUGCUGcACUGG- -5'
21380 3' -57.2 NC_004812.1 + 21713 0.66 0.874819
Target:  5'- cGGUGGUGuagaucaccaCGCGGuacucgccccACGugGUGACg -3'
miRNA:   3'- aCCACCACc---------GCGCCu---------UGCugCACUGg -5'
21380 3' -57.2 NC_004812.1 + 22267 0.66 0.888555
Target:  5'- cGGgcccGG-GGCGCgcgucuuucGGAGCGAgGgUGACCc -3'
miRNA:   3'- aCCa---CCaCCGCG---------CCUUGCUgC-ACUGG- -5'
21380 3' -57.2 NC_004812.1 + 22757 0.66 0.867638
Target:  5'- gUGGUGGaccUGGUGCguccaggugGGGGCGuuuguCGUGuCCg -3'
miRNA:   3'- -ACCACC---ACCGCG---------CCUUGCu----GCACuGG- -5'
21380 3' -57.2 NC_004812.1 + 22900 0.69 0.748817
Target:  5'- cGGccgaGGU-GCGCGGG--GGCGUGGCCg -3'
miRNA:   3'- aCCa---CCAcCGCGCCUugCUGCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.