Results 21 - 40 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 3' | -57.2 | NC_004812.1 | + | 71817 | 0.74 | 0.474348 |
Target: 5'- aGGUGGUGGCGgaaGGGggaggguGCGGCGgccgggcGGCCg -3' miRNA: 3'- aCCACCACCGCg--CCU-------UGCUGCa------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 65367 | 0.73 | 0.493857 |
Target: 5'- aGGUcgaggagacGGUGGCGCGGAuCGACGcgcuCCg -3' miRNA: 3'- aCCA---------CCACCGCGCCUuGCUGCacu-GG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 35681 | 0.73 | 0.493857 |
Target: 5'- cGGUGGgggagGGgGCGGGGCGAgGgcugGugCg -3' miRNA: 3'- aCCACCa----CCgCGCCUUGCUgCa---CugG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 4780 | 0.73 | 0.493857 |
Target: 5'- cGGUGGgggagGGgGCGGGGCGAgGgcugGugCg -3' miRNA: 3'- aCCACCa----CCgCGCCUUGCUgCa---CugG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 52827 | 0.73 | 0.503276 |
Target: 5'- -cGUGGUGGCcUGGGGCGACGgccacacgcccGACCg -3' miRNA: 3'- acCACCACCGcGCCUUGCUGCa----------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 144856 | 0.73 | 0.503276 |
Target: 5'- aGGUGGUgugGGUGCGGuuCGACGUccCCg -3' miRNA: 3'- aCCACCA---CCGCGCCuuGCUGCAcuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 38588 | 0.73 | 0.507065 |
Target: 5'- gGGUGGgcgGGCGCGGGggucgcgccgaguccGCGGCGgggGucuCCg -3' miRNA: 3'- aCCACCa--CCGCGCCU---------------UGCUGCa--Cu--GG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 7687 | 0.73 | 0.507065 |
Target: 5'- gGGUGGgcgGGCGCGGGggucgcgccgaguccGCGGCGgggGucuCCg -3' miRNA: 3'- aCCACCa--CCGCGCCU---------------UGCUGCa--Cu--GG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 90408 | 0.73 | 0.508014 |
Target: 5'- cGGUGGuugUcuugucgucugugcgGGCGCGGGACGGCGgggugggaaugacugGACCg -3' miRNA: 3'- aCCACC---A---------------CCGCGCCUUGCUGCa--------------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 147856 | 0.73 | 0.512772 |
Target: 5'- cGGUGGUGGUGUGu-GCGGCGcGcCCg -3' miRNA: 3'- aCCACCACCGCGCcuUGCUGCaCuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 11925 | 0.73 | 0.512772 |
Target: 5'- gGGUGG-GGCgGCGGGGCgGGgGUGGCg -3' miRNA: 3'- aCCACCaCCG-CGCCUUG-CUgCACUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 116955 | 0.73 | 0.512772 |
Target: 5'- cGGUGGUGGUGUGu-GCGGCGcGcCCg -3' miRNA: 3'- aCCACCACCGCGCcuUGCUGCaCuGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 53621 | 0.73 | 0.512772 |
Target: 5'- gUGGUGGagagGGCggacgaggagaaGCGGAACGAgG-GGCCg -3' miRNA: 3'- -ACCACCa---CCG------------CGCCUUGCUgCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 2810 | 0.73 | 0.522341 |
Target: 5'- -cGUGGcGGCGCGcGACGGCG-GGCCc -3' miRNA: 3'- acCACCaCCGCGCcUUGCUGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 128318 | 0.73 | 0.522341 |
Target: 5'- -cGUGGcGGCGCGcGACGGCG-GGCCc -3' miRNA: 3'- acCACCaCCGCGCcUUGCUGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 105669 | 0.73 | 0.531978 |
Target: 5'- gUGGUGGUGGgGCGcGuACGcCGgGGCCc -3' miRNA: 3'- -ACCACCACCgCGC-CuUGCuGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 127896 | 0.73 | 0.541678 |
Target: 5'- cUGGUGucGGCGCGGGGCGGCGgucGCg -3' miRNA: 3'- -ACCACcaCCGCGCCUUGCUGCac-UGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 106230 | 0.72 | 0.550458 |
Target: 5'- cGGUGGUgcacgcgcccccGGCGUcgGGGGCGcccuaccGCGUGGCCc -3' miRNA: 3'- aCCACCA------------CCGCG--CCUUGC-------UGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 81941 | 0.72 | 0.555355 |
Target: 5'- aGGUaGGcGGCGCGGcACGugGUccgcagggcguccccGACCa -3' miRNA: 3'- aCCA-CCaCCGCGCCuUGCugCA---------------CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 110352 | 0.72 | 0.560264 |
Target: 5'- cGG-GGUGGCGCGGGugauccaACaGGCGgugcugcugGACCg -3' miRNA: 3'- aCCaCCACCGCGCCU-------UG-CUGCa--------CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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