Results 21 - 40 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21380 | 3' | -57.2 | NC_004812.1 | + | 41562 | 0.66 | 0.881793 |
Target: 5'- ------cGGCGCGGGcugaGCGACGUGcaGCCc -3' miRNA: 3'- accaccaCCGCGCCU----UGCUGCAC--UGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 71936 | 0.66 | 0.881793 |
Target: 5'- cGGcgaGGacGGCGCGGGGCGGCccuGCCg -3' miRNA: 3'- aCCa--CCa-CCGCGCCUUGCUGcacUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 81395 | 0.66 | 0.881793 |
Target: 5'- cUGGUaGGcGGCGCaGuauCGAC-UGACCg -3' miRNA: 3'- -ACCA-CCaCCGCGcCuu-GCUGcACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 147109 | 0.66 | 0.881793 |
Target: 5'- aGGUGGcGGCaGUGGGugGA-GUacaGGCCu -3' miRNA: 3'- aCCACCaCCG-CGCCUugCUgCA---CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 76727 | 0.66 | 0.881793 |
Target: 5'- gGGUGGaGGC-CGGAGa-GCGcGGCCg -3' miRNA: 3'- aCCACCaCCGcGCCUUgcUGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 6831 | 0.66 | 0.881793 |
Target: 5'- gGGUGGggGGCgGCGGcccucgcggucGGCGAgGcGGCCc -3' miRNA: 3'- aCCACCa-CCG-CGCC-----------UUGCUgCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 113150 | 0.66 | 0.881793 |
Target: 5'- aGGcuccGG-GGCGCGaGGGuCGGCGgagGGCCg -3' miRNA: 3'- aCCa---CCaCCGCGC-CUU-GCUGCa--CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 107061 | 0.66 | 0.881793 |
Target: 5'- cUGGaUGGccaGCGCGucguGGGCGGCGaUGACCu -3' miRNA: 3'- -ACC-ACCac-CGCGC----CUUGCUGC-ACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 138319 | 0.66 | 0.881793 |
Target: 5'- gGGUGGcgccGGCGCGGAGgaGGCccugcgGAUCg -3' miRNA: 3'- aCCACCa---CCGCGCCUUg-CUGca----CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 46290 | 0.66 | 0.874819 |
Target: 5'- cGG-GGcGGC-CGGAggccGCGGCG-GGCCg -3' miRNA: 3'- aCCaCCaCCGcGCCU----UGCUGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 71309 | 0.66 | 0.874819 |
Target: 5'- cGGgcuuccGGUGuGCGCGGcuuCGugG-GGCCc -3' miRNA: 3'- aCCa-----CCAC-CGCGCCuu-GCugCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 9089 | 0.66 | 0.874819 |
Target: 5'- aGGcGGcGGCGCGaaGACGGCGccucggGGCCa -3' miRNA: 3'- aCCaCCaCCGCGCc-UUGCUGCa-----CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 147220 | 0.66 | 0.874819 |
Target: 5'- gGGcGuUGGC-CGGAAauagGGCGUGGCCg -3' miRNA: 3'- aCCaCcACCGcGCCUUg---CUGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 78082 | 0.66 | 0.874819 |
Target: 5'- -cGUGGaagucguccgUGGUGCGGA-UGACGUcgcgGGCCa -3' miRNA: 3'- acCACC----------ACCGCGCCUuGCUGCA----CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 72125 | 0.66 | 0.874819 |
Target: 5'- cGGUGGaGGCGgguCGGGAgGguGCGgGGCCg -3' miRNA: 3'- aCCACCaCCGC---GCCUUgC--UGCaCUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 21713 | 0.66 | 0.874819 |
Target: 5'- cGGUGGUGuagaucaccaCGCGGuacucgccccACGugGUGACg -3' miRNA: 3'- aCCACCACc---------GCGCCu---------UGCugCACUGg -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 148265 | 0.66 | 0.87411 |
Target: 5'- cGGUGGggcGGCcgcgcccggcagcGCGGcGGCGGCGccGGCCc -3' miRNA: 3'- aCCACCa--CCG-------------CGCC-UUGCUGCa-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 117364 | 0.66 | 0.87411 |
Target: 5'- cGGUGGggcGGCcgcgcccggcagcGCGGcGGCGGCGccGGCCc -3' miRNA: 3'- aCCACCa--CCG-------------CGCC-UUGCUGCa-CUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 108040 | 0.66 | 0.872686 |
Target: 5'- cGGUGGaGGUGaCGGcgcuguucgcgacgGACGgcuGCGUGAUCa -3' miRNA: 3'- aCCACCaCCGC-GCC--------------UUGC---UGCACUGG- -5' |
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21380 | 3' | -57.2 | NC_004812.1 | + | 78613 | 0.66 | 0.867638 |
Target: 5'- cGGUGGaagcggcGGCGgGGGGCuguucguuggaaGACGgGGCCg -3' miRNA: 3'- aCCACCa------CCGCgCCUUG------------CUGCaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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