miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 3' -57.2 NC_004812.1 + 19156 0.66 0.867638
Target:  5'- cGG-GG-GGCGCGGcGGCGGCGcccCCa -3'
miRNA:   3'- aCCaCCaCCGCGCC-UUGCUGCacuGG- -5'
21380 3' -57.2 NC_004812.1 + 125712 0.66 0.867638
Target:  5'- gGGaGGUGccCGCGGGGCG-CGgGGCCg -3'
miRNA:   3'- aCCaCCACc-GCGCCUUGCuGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 57002 0.66 0.867638
Target:  5'- cGGUGGUGaGCGgGGGccuGCGGaucccCGaGGCCc -3'
miRNA:   3'- aCCACCAC-CGCgCCU---UGCU-----GCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 63669 0.66 0.867638
Target:  5'- gGGUaGcGGCGCGGAGCucCGUcGCCc -3'
miRNA:   3'- aCCAcCaCCGCGCCUUGcuGCAcUGG- -5'
21380 3' -57.2 NC_004812.1 + 54761 0.66 0.867638
Target:  5'- gGGcGGUGGacacgGCGGcGCu-CGUGGCCg -3'
miRNA:   3'- aCCaCCACCg----CGCCuUGcuGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 146655 0.66 0.867638
Target:  5'- gGGUGG-GGaGgGGAGCGuuG-GACCg -3'
miRNA:   3'- aCCACCaCCgCgCCUUGCugCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 59653 0.66 0.867638
Target:  5'- ---gGGUGGUGUGGGcgcaGGCGUG-CCg -3'
miRNA:   3'- accaCCACCGCGCCUug--CUGCACuGG- -5'
21380 3' -57.2 NC_004812.1 + 114489 0.66 0.867638
Target:  5'- cGG-GGgaagGGCgGCGG-GCGACGgcgGACUc -3'
miRNA:   3'- aCCaCCa---CCG-CGCCuUGCUGCa--CUGG- -5'
21380 3' -57.2 NC_004812.1 + 81986 0.66 0.867638
Target:  5'- cGGgcgGG-GGcCGUcgaGGAGCugGGCGUGGCCg -3'
miRNA:   3'- aCCa--CCaCC-GCG---CCUUG--CUGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 72057 0.66 0.867638
Target:  5'- gGGUcGGgGGCGCugGGGGCGGCGgcuguuucGCCg -3'
miRNA:   3'- aCCA-CCaCCGCG--CCUUGCUGCac------UGG- -5'
21380 3' -57.2 NC_004812.1 + 22757 0.66 0.867638
Target:  5'- gUGGUGGaccUGGUGCguccaggugGGGGCGuuuguCGUGuCCg -3'
miRNA:   3'- -ACCACC---ACCGCG---------CCUUGCu----GCACuGG- -5'
21380 3' -57.2 NC_004812.1 + 60101 0.67 0.860254
Target:  5'- ---aGGUaGGCGCcGAugGcCGUGGCCc -3'
miRNA:   3'- accaCCA-CCGCGcCUugCuGCACUGG- -5'
21380 3' -57.2 NC_004812.1 + 124314 0.67 0.860254
Target:  5'- cGGcgagagGG-GGCGCGGcGCGGgGcgGGCCg -3'
miRNA:   3'- aCCa-----CCaCCGCGCCuUGCUgCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 155215 0.67 0.860254
Target:  5'- cGGcgagagGG-GGCGCGGcGCGGgGcgGGCCg -3'
miRNA:   3'- aCCa-----CCaCCGCGCCuUGCUgCa-CUGG- -5'
21380 3' -57.2 NC_004812.1 + 32831 0.67 0.860254
Target:  5'- cGaGUGGgGGCGgGGGGCGGCccccagggcGGCCa -3'
miRNA:   3'- aC-CACCaCCGCgCCUUGCUGca-------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 136691 0.67 0.860254
Target:  5'- cGGccGccGGCGCGGuGGCGGCGgcgcgGGCCg -3'
miRNA:   3'- aCCacCa-CCGCGCC-UUGCUGCa----CUGG- -5'
21380 3' -57.2 NC_004812.1 + 107293 0.67 0.860254
Target:  5'- cGGUcGGUGG-GCGGGGCcuuggGGCGUuccgggggggcGGCCg -3'
miRNA:   3'- aCCA-CCACCgCGCCUUG-----CUGCA-----------CUGG- -5'
21380 3' -57.2 NC_004812.1 + 72293 0.67 0.860254
Target:  5'- aGGUGcGggccGGgGCGGGGgGACG-GAUCg -3'
miRNA:   3'- aCCAC-Ca---CCgCGCCUUgCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 100462 0.67 0.860254
Target:  5'- gUGGUGcG-GGCGUaGAGgGGCGcGGCCg -3'
miRNA:   3'- -ACCAC-CaCCGCGcCUUgCUGCaCUGG- -5'
21380 3' -57.2 NC_004812.1 + 135883 0.67 0.855728
Target:  5'- aGGUGGUacagacgggggcgggGGCGCGGcucGCaGAgG-GACCg -3'
miRNA:   3'- aCCACCA---------------CCGCGCCu--UG-CUgCaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.